Gene
| Gene Model ID | pfu_aug1.0_9865.1_31841 |
|---|---|
| Locus | scaffold9865.1 : 32456 ... 52376 : + |
| To GenomeBrowser | scaffold9865.1:32456..52376 |
| Genes list of scaffold | scaffold9865.1 |
| Synonym | pfu_aug2.0_505.1_17507 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9865.1_31841.t1 | 1 | 1 | Cpn60_TCP1 | 1 | 369 | 0.0 | 297.4 | 0.0 | 0.0 | 289.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9865.1_31841.t1 | gi|260830111|ref|XP_002610005.1| | hypothetical protein BRAFLDRAFT_62187 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9865.1_31841.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9865.1_31841.t1 atgctggtagatgatataggggatgtaactattacaaatgatggtgccacaattctgaagttactggaagtggaacaccc agcggccaaagtcttagtggaactagctgatttacaagatcaggaagtgggggatggaaccacatctgtgcctatatcct tctctaaactgatacttctacaatcatggactcgttaagaggcttgtaaatacatccaagaacatctgacaatcaacgtg gaagagctcggtagagaatgtatactgaactgtgcgaaaactagcatgtccagtaaaatcatcggagcggaatctgaatt tttttccaacatggtggtggacgccgccaatgcaataaagacatctgacggtaaagggggatttaaatatccaatcaaag ccgtgaatgtactgaaggctcatgggaaaagctcaaaggaaagtctactcatccatggttatgcactcaactgtacagtc gcgtcacaagctatgacaaaacgggtgaataacgcaaagatagctctgttagacttcagtttacaaaaggccaaaatgaa gatgggtgtccaagtccttatagaaaatcctgagcagctagatggcgtaaggcaaagagagtacgacatcacaaaggaga ggatagagaaaattctagctaccggagccaatgttgtcttgacgacgggaggcatcgatgatttatgtctgaaatatttc gtagaagctggtgccatggccgtcagaagatgtaaaaaagtggatctgaagagaatagctaaagccacagggggaacatt ggtgatgaccttggctaaccttgaaggtgaggaatcgttcgaggcatccatgttaggtcaggccgatgaggttctacaag agagaatatgcgacgatgaacttatccttgtcaaaggtccaaaagctagatcagctgcgtccatcgttcttagaggtgcg aatgacttcatgtgtgatgagatggaacgttctgtccatgatgccctttgtgtagtcaagcgcgtcctcgaatctaaaac ggtcgttccgggaggtggagctgtggaatctgcgctatccatttacttagaaaacttcgctacttcgttgatcaatgtat atcatctagacaatattcgctattttcaaaaaccagagttacttcccatttga |
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Protein
| Protein ID | pfu_aug1.0_9865.1_31841.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9865.1_31841.t1 MLVDDIGDVTITNDGATILKLLEVEHPAAKVLVELADLQDQEVGDGTTSVPISFSKLILLQSWTRXEACKYIQEHLTINV EELGRECILNCAKTSMSSKIIGAESEFFSNMVVDAANAIKTSDGKGGFKYPIKAVNVLKAHGKSSKESLLIHGYALNCTV ASQAMTKRVNNAKIALLDFSLQKAKMKMGVQVLIENPEQLDGVRQREYDITKERIEKILATGANVVLTTGGIDDLCLKYF VEAGAMAVRRCKKVDLKRIAKATGGTLVMTLANLEGEESFEASMLGQADEVLQERICDDELILVKGPKARSAASIVLRGA NDFMCDEMERSVHDALCVVKRVLESKTVVPGGGAVESALSIYLENFATSLINVYHLDNIRYFQKPELLPI |
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