Gene
| Gene Model ID | pfu_aug1.0_9933.1_68120 |
|---|---|
| Locus | scaffold9933.1 : 51766 ... 61853 : + |
| To GenomeBrowser | scaffold9933.1:51766..61853 |
| Genes list of scaffold | scaffold9933.1 |
| Synonym | pfu_aug2.0_1634.1_15159 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | presenilin 1-2 |
| Description | Best hit Aplysia californica presenilin 1-2 by NCBI domain search |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9933.1_68120.t1 | 2 | 1 | Presenilin | 62 | 81 | 0.0 | 273.4 | 0.057 | 420.0 | -0.6 |
| pfu_aug1.0_9933.1_68120.t1 | 2 | 2 | Presenilin | 98 | 287 | 0.0 | 273.4 | 0.0 | 0.0 | 273.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9933.1_68120.t1 | gi|46981378|gb|AAT07667.1| | presenilin 1-2 [Aplysia californica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9933.1_68120.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9933.1_68120.t1 atgagtctgacacttgacgtagatttgaatgctgattcagactcggaacttgattctgaaacatcaccactcatgaatgc cacagcagccccacttgatccatctcggaaccgcttgtacggagaacctgtacccgctcagcgacgtagtggtatacggg aagaattgtaccaaggtgctgaaacacagacagattctgaaaggaacatacagaacaatagcaatgatgcaaacagagaa tcacgtagtagtactacacggaggcgtcgtggacaaagcgggacagaggaggaagacgacaccctgctatatggtgccaa acatgttattatgctgtttgtacctgtaactctttgtatggctgttgtagtggcaactatcagttctgtggctttctaca ctaaaaaaggaggatacttgatctatacaccgtttcatgatgctgacaaggctgatgcagacacaggaactaagatttgg cagtcagtggccaatgcgggtattttgttgggggtcatctgtgtcatgaccattctgctcctggttctctacaagtatag atgctacaaagttatacatggctggttgataatctcatctttgatgttacttttccttttctcttacatatatctaggag ttgtattacaagcttataatgtaccaatggactacatcactgtagtgctactgatgtggaactttggtgtggtgggcatg atctgtatacactggaaaggaccactgttcttacagcaggcatatcttatcatgatatctgccctgatggcacttatctt catcaagtaccttcctgactggacaacatgggtggtgctaggggtcatggtcgtctgggatagtttaagttggacagtgt atgtgatgaaagatgcagttgactttactagtatacattatattgattatattctgaatgtcctcaatttatcattcatc agagacatcatcgatgtttttgcataa |
|
Protein
| Protein ID | pfu_aug1.0_9933.1_68120.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9933.1_68120.t1 MSLTLDVDLNADSDSELDSETSPLMNATAAPLDPSRNRLYGEPVPAQRRSGIREELYQGAETQTDSERNIQNNSNDANRE SRSSTTRRRRGQSGTEEEDDTLLYGAKHVIMLFVPVTLCMAVVVATISSVAFYTKKGGYLIYTPFHDADKADADTGTKIW QSVANAGILLGVICVMTILLLVLYKYRCYKVIHGWLIISSLMLLFLFSYIYLGVVLQAYNVPMDYITVVLLMWNFGVVGM ICIHWKGPLFLQQAYLIMISALMALIFIKYLPDWTTWVVLGVMVVWDSLSWTVYVMKDAVDFTSIHYIDYILNVLNLSFI RDIIDVFA |
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