Gene
| Gene Model ID | pfu_aug1.0_9934.1_31853 |
|---|---|
| Locus | scaffold9934.1 : 5015 ... 16265 : - |
| To GenomeBrowser | scaffold9934.1:5015..16265 |
| Genes list of scaffold | scaffold9934.1 |
| Synonym | pfu_aug2.0_392.1_07445 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9934.1_31853.t1 | 3 | 1 | Mito_carr | 4 | 97 | 0.0 | 185.0 | 1.1e-24 | 4.2e-21 | 74.4 |
| pfu_aug1.0_9934.1_31853.t1 | 3 | 2 | Mito_carr | 101 | 190 | 0.0 | 185.0 | 3.5e-26 | 1.3e-22 | 79.2 |
| pfu_aug1.0_9934.1_31853.t1 | 3 | 3 | Mito_carr | 198 | 257 | 0.0 | 185.0 | 2.4e-10 | 8.8e-07 | 28.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9934.1_31853.t1 | gi|149642783|ref|NP_001092365.1| | kidney mitochondrial carrier protein 1 [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9934.1_31853.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9934.1_31853.t1 atggataactggcgcccgtttgtttatggtggactcgcatcaatgacagcagaggctggaacttttcctattgataccac caagacacgcctacaaatccaaggtcagaagattgatgtcaaggtcacccaactcaagtacagaggaatgctgcatgccc tagttaccatagctagagaagagggaccaaaggcgttatatcagggaatttctcctgcattattaagacaagctacctac ggaaccattaaaattggtgtttatcattcattaaagagaatggtggtagaaaatcctaaagatgagacgttggtagttaa cgtagcctgtggtatagtggccggaatcgtctccagttctatagcaaatcccacagatgtgttaaaagtacgcatgcagg ctaatacggtaatggacgagaggacgtcaatgatgcgatcgtttataaatatatacaaacaggagggagtcaaaggattg tggaggggagtggtaccaacagcacagagggcagccattatagctggtgttgaattaccggtttatgatttctgtaagaa gtatattatacgatttgaggtgctaggtgataccatggtaacacattttatatctagtttctttgctggtctggctggtg caatattttctactccagtagatgtcgttaagactaggttgatgaatcagaagagacttaaaatgccggtacaaggcgga tcttcatcacctaatcctgtgatatataaatcatctatagattgtattatacaggacgtgcgtatttatggaggctacga gtgctgcgtgcgtttttctgatgatgcaaggaaggaagtggcaaagagtacggaaggagtgcgtcaacgcacattgcatg gttatatgggtggttacatgcatcatatgttgcgcaaaaaaaatgacacgcagacaggatgcagcgaaagttctgtacgc actaaaactgctatgtcctgtacgtag |
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Protein
| Protein ID | pfu_aug1.0_9934.1_31853.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9934.1_31853.t1 MDNWRPFVYGGLASMTAEAGTFPIDTTKTRLQIQGQKIDVKVTQLKYRGMLHALVTIAREEGPKALYQGISPALLRQATY GTIKIGVYHSLKRMVVENPKDETLVVNVACGIVAGIVSSSIANPTDVLKVRMQANTVMDERTSMMRSFINIYKQEGVKGL WRGVVPTAQRAAIIAGVELPVYDFCKKYIIRFEVLGDTMVTHFISSFFAGLAGAIFSTPVDVVKTRLMNQKRLKMPVQGG SSSPNPVIYKSSIDCIIQDVRIYGGYECCVRFSDDARKEVAKSTEGVRQRTLHGYMGGYMHHMLRKKNDTQTGCSESSVR TKTAMSCT |
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