Gene
| Gene Model ID | pfu_aug1.0_994.1_43872 |
|---|---|
| Locus | scaffold994.1 : 4922 ... 6405 : - |
| To GenomeBrowser | scaffold994.1:4922..6405 |
| Genes list of scaffold | scaffold994.1 |
| Synonym | pfu_aug2.0_2221.1_05458 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-atonal |
| Description | Best hit to AAH69578 ATOH1 protein [Homo sapiens] with 3e-24 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_994.1_43872.t1 | 1 | 1 | HLH | 130 | 182 | 1.5e-17 | 63.0 | 2.2e-21 | 3.2e-17 | 61.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_994.1_43872.t1 | gi|91078386|ref|XP_974297.1| | PREDICTED: basic helix-loop-helix transcription factor amos [Tribolium castaneum] | 3.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_994.1_43872.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_994.1_43872.t1 atgctgcagaacacggacgctttagatagtatacagagtcgggagctcgtaacaaacaatgtgtatccacaaggagacag tagctttcagcaactgaccatagctcttggtcatctgtccaacatcccagagaatgaagacctggtcagttttgggtctc ctaaaagttacctggccagtgacagtgactgtactccgatgtccacaccatgcactcctctcagtccaggatatactaac aatggaaaccggtttctgtttccaggagagcgcggttatcaaatacaaaataattcatcatcaactgacaacagtgctac cgctaccaaatcacataaaatcaaacgccggagtacggcgccagcgagtaaagacgtaatgaaaagacgacggttagcag caaacgcccgagaaagacgacgcatggaaagtctgaacgttgcttttgaccgtcttcgtgcagtgattccatccattggt gaaaaccagaaactgtcaaagtacgaaactctgcaaatggcgcagagctatattggcgcactacaagaactgcttgtgaa ggactaa |
|
Protein
| Protein ID | pfu_aug1.0_994.1_43872.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_994.1_43872.t1 MLQNTDALDSIQSRELVTNNVYPQGDSSFQQLTIALGHLSNIPENEDLVSFGSPKSYLASDSDCTPMSTPCTPLSPGYTN NGNRFLFPGERGYQIQNNSSSTDNSATATKSHKIKRRSTAPASKDVMKRRRLAANARERRRMESLNVAFDRLRAVIPSIG ENQKLSKYETLQMAQSYIGALQELLVKD |
|