Gene
Gene Model ID | pfu_aug1.0_994.1_43875 |
---|---|
Locus | scaffold994.1 : 96708 ... 103475 : - |
To GenomeBrowser | scaffold994.1:96708..103475 |
Genes list of scaffold | scaffold994.1 |
Synonym | pfu_aug2.0_996.1_21327 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_994.1_43875.t1 | 3 | 1 | THUMP | 12 | 38 | 3.0e-13 | 49.8 | 0.037 | 550.0 | 0.3 |
pfu_aug1.0_994.1_43875.t1 | 3 | 2 | THUMP | 177 | 198 | 3.0e-13 | 49.8 | 0.064 | 950.0 | -0.4 |
pfu_aug1.0_994.1_43875.t1 | 3 | 3 | THUMP | 238 | 344 | 3.0e-13 | 49.8 | 2.6e-16 | 3.9e-12 | 46.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_994.1_43875.t1 | gi|21704176|ref|NP_663560.1| | THUMP domain-containing protein 1 [Mus musculus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_994.1_43875.t1 |
---|---|
Definition | - |
>pfu_aug1.0_994.1_43875.t1 atgtccagtaatatcggcaccctcaacaagagagagtgcatttcttttaaaatcagcgttgtgcgatggctgaaatgtaa tgttacaagtttacgactataccatgtgattggtgttccccaagacgcccgcaaccaaacttttattttagttcgttgtg accctggaaggttatcaaccatgagtgaaagaagaggcaaaaagcgcccaaagtcatactacataaagtgtgctaaaaaa gccaagccaggtggtggagggcggttgcaagcaggaatgaaggggttccttgtcacttgtaacaaacatgagaaagaagc tgttcgggaaatgtataacttacttaatgagtatgcggacgttctttatggtagagagaagttaaaatggaggagtgatg gtaaggaggaagagaaaggagaggattgtgatcaagtcagtacagaggtgaaagagaagaaagaggaagattgtagtcag gttgatacagtggtacagggtaagaaaggtgaagagtgtggctctgatgaagaagatagtgaagaggaagacatagaaaa agccatgaataaagaaatcaaagatatcaaagactcacagaaaacagagaggaggttccaaaataccaacaccaaagtct ctaactgtatcttcatccgtaccaccttggaagatccttgtgctttggtgcatcacatcttcacagacttggcatctagt aagcagcagaaaactcgttcagcaataaggatccttcctattagcgactcttgtaaggcttttgatgaagatataaagaa gttggcagagaagttattccgttcttactttgagacagagtatggatgtggattagcgttcacaattatgttcaagacac gtaataatagtggtataggcagagactctgtaataccgatgctgggtcagataatccgagatctcaatcctctacacaga atcaatcacattaatccagactatacggtccttgtagaaattgtaggcaatatctgctgtatgagtgtagtcaaggactt cttcaaattcagaaagtataatttacatgaagttgtgaagacaagaaccgagggtgtgccgcaccatttaaacacaatgg atcatagagaaggtgaaatgaactcaaagaagtcaactagtgagagggtccaaggaactgtgcctgcacaagatgatcat gatgatagagaaagaagagacgaaagtgacataaaagatgactgtgagaaagatgtgaaaactgaaaatggtgacagaat tacacttgagaatgtggataaagcagaaattaagagagagcttgatgaggaatgtggtgtgaatgggaaaaaagattgtg acattggaaaagcgatagtcaaagaagaatcctcttga |
Protein
Protein ID | pfu_aug1.0_994.1_43875.t1 |
---|---|
Definition | - |
>pfu_aug1.0_994.1_43875.t1 MSSNIGTLNKRECISFKISVVRWLKCNVTSLRLYHVIGVPQDARNQTFILVRCDPGRLSTMSERRGKKRPKSYYIKCAKK AKPGGGGRLQAGMKGFLVTCNKHEKEAVREMYNLLNEYADVLYGREKLKWRSDGKEEEKGEDCDQVSTEVKEKKEEDCSQ VDTVVQGKKGEECGSDEEDSEEEDIEKAMNKEIKDIKDSQKTERRFQNTNTKVSNCIFIRTTLEDPCALVHHIFTDLASS KQQKTRSAIRILPISDSCKAFDEDIKKLAEKLFRSYFETEYGCGLAFTIMFKTRNNSGIGRDSVIPMLGQIIRDLNPLHR INHINPDYTVLVEIVGNICCMSVVKDFFKFRKYNLHEVVKTRTEGVPHHLNTMDHREGEMNSKKSTSERVQGTVPAQDDH DDRERRDESDIKDDCEKDVKTENGDRITLENVDKAEIKRELDEECGVNGKKDCDIGKAIVKEESS |