Gene
| Gene Model ID | pfu_aug1.0_994.1_43875 |
|---|---|
| Locus | scaffold994.1 : 96708 ... 103475 : - |
| To GenomeBrowser | scaffold994.1:96708..103475 |
| Genes list of scaffold | scaffold994.1 |
| Synonym | pfu_aug2.0_996.1_21327 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_994.1_43875.t1 | 3 | 1 | THUMP | 12 | 38 | 3.0e-13 | 49.8 | 0.037 | 550.0 | 0.3 |
| pfu_aug1.0_994.1_43875.t1 | 3 | 2 | THUMP | 177 | 198 | 3.0e-13 | 49.8 | 0.064 | 950.0 | -0.4 |
| pfu_aug1.0_994.1_43875.t1 | 3 | 3 | THUMP | 238 | 344 | 3.0e-13 | 49.8 | 2.6e-16 | 3.9e-12 | 46.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_994.1_43875.t1 | gi|21704176|ref|NP_663560.1| | THUMP domain-containing protein 1 [Mus musculus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_994.1_43875.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_994.1_43875.t1 atgtccagtaatatcggcaccctcaacaagagagagtgcatttcttttaaaatcagcgttgtgcgatggctgaaatgtaa tgttacaagtttacgactataccatgtgattggtgttccccaagacgcccgcaaccaaacttttattttagttcgttgtg accctggaaggttatcaaccatgagtgaaagaagaggcaaaaagcgcccaaagtcatactacataaagtgtgctaaaaaa gccaagccaggtggtggagggcggttgcaagcaggaatgaaggggttccttgtcacttgtaacaaacatgagaaagaagc tgttcgggaaatgtataacttacttaatgagtatgcggacgttctttatggtagagagaagttaaaatggaggagtgatg gtaaggaggaagagaaaggagaggattgtgatcaagtcagtacagaggtgaaagagaagaaagaggaagattgtagtcag gttgatacagtggtacagggtaagaaaggtgaagagtgtggctctgatgaagaagatagtgaagaggaagacatagaaaa agccatgaataaagaaatcaaagatatcaaagactcacagaaaacagagaggaggttccaaaataccaacaccaaagtct ctaactgtatcttcatccgtaccaccttggaagatccttgtgctttggtgcatcacatcttcacagacttggcatctagt aagcagcagaaaactcgttcagcaataaggatccttcctattagcgactcttgtaaggcttttgatgaagatataaagaa gttggcagagaagttattccgttcttactttgagacagagtatggatgtggattagcgttcacaattatgttcaagacac gtaataatagtggtataggcagagactctgtaataccgatgctgggtcagataatccgagatctcaatcctctacacaga atcaatcacattaatccagactatacggtccttgtagaaattgtaggcaatatctgctgtatgagtgtagtcaaggactt cttcaaattcagaaagtataatttacatgaagttgtgaagacaagaaccgagggtgtgccgcaccatttaaacacaatgg atcatagagaaggtgaaatgaactcaaagaagtcaactagtgagagggtccaaggaactgtgcctgcacaagatgatcat gatgatagagaaagaagagacgaaagtgacataaaagatgactgtgagaaagatgtgaaaactgaaaatggtgacagaat tacacttgagaatgtggataaagcagaaattaagagagagcttgatgaggaatgtggtgtgaatgggaaaaaagattgtg acattggaaaagcgatagtcaaagaagaatcctcttga |
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Protein
| Protein ID | pfu_aug1.0_994.1_43875.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_994.1_43875.t1 MSSNIGTLNKRECISFKISVVRWLKCNVTSLRLYHVIGVPQDARNQTFILVRCDPGRLSTMSERRGKKRPKSYYIKCAKK AKPGGGGRLQAGMKGFLVTCNKHEKEAVREMYNLLNEYADVLYGREKLKWRSDGKEEEKGEDCDQVSTEVKEKKEEDCSQ VDTVVQGKKGEECGSDEEDSEEEDIEKAMNKEIKDIKDSQKTERRFQNTNTKVSNCIFIRTTLEDPCALVHHIFTDLASS KQQKTRSAIRILPISDSCKAFDEDIKKLAEKLFRSYFETEYGCGLAFTIMFKTRNNSGIGRDSVIPMLGQIIRDLNPLHR INHINPDYTVLVEIVGNICCMSVVKDFFKFRKYNLHEVVKTRTEGVPHHLNTMDHREGEMNSKKSTSERVQGTVPAQDDH DDRERRDESDIKDDCEKDVKTENGDRITLENVDKAEIKRELDEECGVNGKKDCDIGKAIVKEESS |
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