Gene
| Gene Model ID | pfu_aug1.0_9985.1_17562 |
|---|---|
| Locus | scaffold9985.1 : 134573 ... 148142 : - |
| To GenomeBrowser | scaffold9985.1:134573..148142 |
| Genes list of scaffold | scaffold9985.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | ribosomal protein S6 |
| Description | GenBank: ACY71281.1 ribosomal protein S6 [Chrysomela tremula] |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | ribosomal protein S6 |
| Description | GenBank: ACY71281.1 ribosomal protein S6 [Chrysomela tremula] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9985.1_17562.t1 | 1 | 1 | Ribosomal_S6e | 12 | 94 | 8.59977e-42 | 141.7 | 1.4013e-45 | 1.70006e-41 | 140.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9985.1_17562.t1 | gi|264667391|gb|ACY71281.1| | ribosomal protein S6 [Chrysomela tremula] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_9985.1_17562.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9985.1_17562.t1 cactctgtgacatctcatttgttagaattatatttttacagggatacgtcctaagaatcgcaggtggaaacgacaaacag ggatttccaatgaagcaaggtgtcctgacaaatgtacgagttcgtcttcttctcagtaagggtcattcctgcttccgtcc aaggcgatctggcgagaggcgaaggaagtccgtgaggggatgcattgtagacagtaatctgagtgtattagccatggtta ttgttaagaaaggtgaaaaggaaatccctggattgactgataccacagttccaagacggcttgggccaaaacgtgccagc aaaatcaggaagctgtttaacttatcgaaggaggatgatgtccgtcaatatgttgtcagaagacccctggcccccaaaga gggcaaagaaagaatttttgccaagtttattgtatctgattggtcaatccgcttatttcttgaatctactgagatgggaa aatga |
|
Protein
| Protein ID | pfu_aug1.0_9985.1_17562.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9985.1_17562.t1 LCDISFVRIIFLQGYVLRIAGGNDKQGFPMKQGVLTNVRVRLLLSKGHSCFRPRRSGERRRKSVRGCIVDSNLSVLAMVI VKKGEKEIPGLTDTTVPRRLGPKRASKIRKLFNLSKEDDVRQYVVRRPLAPKEGKERIFAKFIVSDWSIRLFLESTEMGK |
|