Gene
| Gene Model ID | pfu_aug2.0_1.1_03317 |
|---|---|
| Locus | scaffold1.1 : 17486 ... 28637 : + |
| To GenomeBrowser | scaffold1.1:17486..28637 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_197.1_22066 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03317.t1 | 2 | 1 | zf-B_box | 222 | 264 | 7.0e-13 | 48.2 | 4.8e-09 | 1.8e-05 | 24.5 |
| pfu_aug2.0_1.1_03317.t1 | 2 | 2 | zf-B_box | 281 | 317 | 7.0e-13 | 48.2 | 2.0e-10 | 7.4e-07 | 28.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03317.t1 | gi|734608966|ref|XP_010731766.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM33-like [Larimichthys crocea] | 2.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03317.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03317.t1 atggcgtcttctgatcgaggaaagcggctttctgtagagacgagaaaattcattttagctcgtaagtctgatggacttag tgttcaaagaattaaatctgaactgaagaaatgtttactaatcgatgtgtcgcgccagactatctacaacattgttagtc acggcagtttggtcagaagaaggtcaaccaacggcggcaacgctaccaaaatccggccagtacacatgaggtttctgaac atttggctgtccaaaaataatgaactcacttctaaggacattgttgacaagttaagatcgaccttcggtgtggggatttc tcacggatatgccagtattatcagaaggaagttaggctggatgaaatcaacggggaagtattgccagctgattagcaaca agaacaaagcgcctgcattttatggtgacataattaacgaaataagtaggatcaaagttggctcagatgttggcgtgagg gggtccaaggagcaggaggaaaccggagtacccggagaaaaaccccctgcagaggcctgggtgggggaccacctaccctc ccacataagaccctttgccgaatctgagattcgatcccgggaacttagagtaataatggcggagggtttcagtcctccat tgcaatttccccagacgacagttgaatgtgagaaatgcggtgctgactttgatgtcacgtggttttgtaagaattgtcct gtctccctctgtaataactgcaaagaagaccattcaagagataaactgatgggtaaacatgaagtggtaccaagatctga aggcgtgctgtggtcccatggatcatggaaagtgagggaaccatgtaaaactcataaaaacagtgatttaataacttact gcagcgattgtggagtaccatgttgtattgattgtatggaggataaacatcaacgcatcaaccatgttgtattgattgta tggaggataaacatcaacgcatcaacgcatcaaaacttgaaacaaaatattttgaagccgaatctcgccttaactctatg ggaatgcatttgtaatattgaggaaaaaatcaaaattcctgagcatcagattaacgaaattgaaaatttcattgcaagaa tggagcagaaaataagggaagggggtctggatctgatagagtactttcctacaccccctaccctcccgtcattccactct gacataaccacacctgttcctcgttttgaatttaatgaaggcattctaaacgaatgtaaaacaaacatgggacagatcgg ttttcaagacagtaaggatagttcaaatcatgcatcattgcccaatgaaaatgttcgtagtagaaaggaaagtcatggtt caccggaaacggatgacgaggaggtaagtgttcatggcatcaaaatagaaaatgccggtggttttcaaacatgcatttgt gttgagactatagagtctataggtgatgacacagcctggattgcatcgtctggcattgacgccatgtatctctatcacat cagtggtacagagataaggtcagttacaatagaaggacgaagggttttttttaagaaagctacagatatcagcattttgg acatagcggtgcagaacaatgatgacattgtcatgacgtgcttggatcgcaagataagacgtgtatcatgggacgttaag ataactactctgatagacacagagctattcattcctaaaggagtgtgtctgacggacagggaagagatagtggtatgtat ggcaggtcagggtgacaaaaaccacgtggctgagtatacacctgacggtaagtcaaagcttagggaaataacagcaagag atatcaacgacaaacagttgtttacccgtccatatcgtgtggttatcaatgacggtcagataacagtggtaaaccagggt gatgacgtggtatctgtggaccaacacagtggtgaggttatatgggtgtatgatggtagtcaggcaacactagaacagaa cttttatccctcaggaatgtgtaaggatggatag |
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Protein
| Protein ID | pfu_aug2.0_1.1_03317.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03317.t1 MASSDRGKRLSVETRKFILARKSDGLSVQRIKSELKKCLLIDVSRQTIYNIVSHGSLVRRRSTNGGNATKIRPVHMRFLN IWLSKNNELTSKDIVDKLRSTFGVGISHGYASIIRRKLGWMKSTGKYCQLISNKNKAPAFYGDIINEISRIKVGSDVGVR GSKEQEETGVPGEKPPAEAWVGDHLPSHIRPFAESEIRSRELRVIMAEGFSPPLQFPQTTVECEKCGADFDVTWFCKNCP VSLCNNCKEDHSRDKLMGKHEVVPRSEGVLWSHGSWKVREPCKTHKNSDLITYCSDCGVPCCIDCMEDKHQRINHVVLIV WRININASTHQNLKQNILKPNLALTLWECICNIEEKIKIPEHQINEIENFIARMEQKIREGGLDLIEYFPTPPTLPSFHS DITTPVPRFEFNEGILNECKTNMGQIGFQDSKDSSNHASLPNENVRSRKESHGSPETDDEEVSVHGIKIENAGGFQTCIC VETIESIGDDTAWIASSGIDAMYLYHISGTEIRSVTIEGRRVFFKKATDISILDIAVQNNDDIVMTCLDRKIRRVSWDVK ITTLIDTELFIPKGVCLTDREEIVVCMAGQGDKNHVAEYTPDGKSKLREITARDINDKQLFTRPYRVVINDGQITVVNQG DDVVSVDQHSGEVIWVYDGSQATLEQNFYPSGMCKDG |
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