Gene
| Gene Model ID | pfu_aug2.0_1.1_03323 |
|---|---|
| Locus | scaffold1.1 : 188252 ... 212199 : + |
| To GenomeBrowser | scaffold1.1:188252..212199 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_7448.1_52961 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03323.t1 | 1 | 1 | SAM_2 | 277 | 338 | 1.4e-07 | 31.2 | 8.8e-11 | 3.3e-07 | 30.0 |
| pfu_aug2.0_1.1_03323.t1 | 1 | 1 | SAM_1 | 281 | 338 | 3.6e-10 | 39.8 | 1.9e-13 | 6.9e-10 | 38.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03323.t1 | gi|676460701|ref|XP_009055710.1| | hypothetical protein LOTGIDRAFT_119139 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1.1_03323.t1 | gi|699697994|ref|XP_009906585.1| | PREDICTED: protein Smaug homolog 1 isoform X2 [Picoides pubescens] | 0.0 |
| pfu_aug2.0_1.1_03323.t1 | gi|632942293|ref|XP_007886332.1| | PREDICTED: protein Smaug homolog 1 isoform X2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1.1_03323.t1 | gi|694858536|ref|XP_009470970.1| | PREDICTED: protein Smaug homolog 1 isoform X2 [Nipponia nippon] | 0.0 |
| pfu_aug2.0_1.1_03323.t1 | gi|527268675|ref|XP_005152398.1| | PREDICTED: protein Smaug homolog 1 isoform X2 [Melopsittacus undulatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03323.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03323.t1 atgaagtccaacaacatgtttcgagaccagatgaacatggtcacagaatggtttgagaactggaacgagtgtgagaagac ggtagcgttatattggctgctaaagcgagtgtcgagcacacagtgtaagttcatagctcaggtcctggagcagatggact gtacagacttagaagggatcacagaggaggctaatgatccaaatttcatcaacaagctatgcacagagagtaaagatcag gcgatagacaaagtcttagctcacctaccattgttacgtgtcggtaacaaaaaggcaaaaactgagtatgtgggactggt accccaacttctgtcatattctatcgaaaacggtgcgtacatagaggaatgcaaccaacttctctcctactccattattc accctgcgctaactagcgacgaacgtgctcatttcaaatggtggtataaacaattggaagaaagatttacgtcgggattt aatggtgtgcaaacacaaacaaaaccaccacaagaaaatttgacgaactatagcagccttacatcagagcagaatgtgca gcgtaatttcgaatccaaccaaacgaatgttggaagtggtagttctttcaccagctacagagacaaagttctgcagccac ctcctggatgtacccaggttaagcaaacaggaggcccacttgggcactcagactctcatggtaaccagcctatctctttg tgctatgaaaatggtttacacgacagtataaactataacccagtacctagtgctcagcatttaccgttacactcgacact ctcagcgccacctaacatgggacatatcgtgccttcatcacaaccacaagacgtgccgatgtggctaaagagtttacggc tccacaagtattcctacctgttccagcaaatgtcatatgaagagatgatgaccctcagtgaagagtggctggaaaaacga aatgtaaccaaaggtgctagacataagattgtattaagtattgccaaactgaaggaaaggcaggatcttctcagatctct ggaaaaggacatagtggagggaggatctatagaggaagcccttaaggagatgaagaacatgttgaacacacccatcaagt gttactgtacgtacgatggtcattctgctgtgtcctcgcccccctccccggtgtctgagacagagaacaccataccagag ggtgatatccctgcacaattcacacgcctaatgggcaaaatatgtactcaacttttagtagcaagccgtccggacgatgt ctgctttaatctatgggggaatactttcccgctgggtgcgggtggaaggttaggtcctgggattcagcgacagatgagac cacagaaatcgggaccccagtggagttttggtacgaaacgattaattgtgggaggtacgaccagcggacatcctccgtta cagagaaatagctcccttaatcctgctatgttctctagaccagggttgttagaggcacaaaaacccccggtgacacgtac tcattcagccccgctccgatctcaacatttgggtctgaacattacaggttgtgatcagtctccgtctgataatgctgaga actacgcccatatggactctctgtgcctgagtgtaacggaatgtgctctcgagtcatgagtcaaatatcaagggctacaa ccatcgacagctatatgtacattaaaccatatcaagtcatgctaa |
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Protein
| Protein ID | pfu_aug2.0_1.1_03323.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03323.t1 MKSNNMFRDQMNMVTEWFENWNECEKTVALYWLLKRVSSTQCKFIAQVLEQMDCTDLEGITEEANDPNFINKLCTESKDQ AIDKVLAHLPLLRVGNKKAKTEYVGLVPQLLSYSIENGAYIEECNQLLSYSIIHPALTSDERAHFKWWYKQLEERFTSGF NGVQTQTKPPQENLTNYSSLTSEQNVQRNFESNQTNVGSGSSFTSYRDKVLQPPPGCTQVKQTGGPLGHSDSHGNQPISL CYENGLHDSINYNPVPSAQHLPLHSTLSAPPNMGHIVPSSQPQDVPMWLKSLRLHKYSYLFQQMSYEEMMTLSEEWLEKR NVTKGARHKIVLSIAKLKERQDLLRSLEKDIVEGGSIEEALKEMKNMLNTPIKCYCTYDGHSAVSSPPSPVSETENTIPE GDIPAQFTRLMGKICTQLLVASRPDDVCFNLWGNTFPLGAGGRLGPGIQRQMRPQKSGPQWSFGTKRLIVGGTTSGHPPL QRNSSLNPAMFSRPGLLEAQKPPVTRTHSAPLRSQHLGLNITGCDQSPSDNAENYAHMDSLCLSVTECALESXVKYQGLQ PSTAICTLNHIKSC |
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