Gene
| Gene Model ID | pfu_aug2.0_1.1_03339 |
|---|---|
| Locus | scaffold1.1 : 474230 ... 477209 : + |
| To GenomeBrowser | scaffold1.1:474230..477209 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_17374.1_69083 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03339.t1 | 2 | 1 | zf-C3HC4_3 | 14 | 66 | 1.8e-06 | 27.5 | 1.6e-09 | 1.8e-06 | 27.5 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 1 | zf-RING_2 | 15 | 60 | 2.2e-06 | 27.3 | 2.0e-09 | 2.2e-06 | 27.3 |
| pfu_aug2.0_1.1_03339.t1 | 1 | 1 | zf-C3HC4 | 16 | 59 | 5.0e-09 | 35.6 | 4.4e-12 | 5.0e-09 | 35.6 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 1 | zf-C3HC4_2 | 16 | 59 | 8.3e-08 | 32.1 | 7.3e-11 | 8.3e-08 | 32.1 |
| pfu_aug2.0_1.1_03339.t1 | 1 | 1 | zf-RING_UBOX | 16 | 59 | 5.9e-07 | 29.1 | 1.4e-09 | 1.6e-06 | 27.6 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 1 | zf-B_box | 31 | 43 | 1.0e-05 | 25.2 | 0.064 | 73.0 | 3.3 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 2 | zf-B_box | 156 | 188 | 1.0e-05 | 25.2 | 9.1e-09 | 1.0e-05 | 25.2 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 2 | zf-C3HC4_2 | 158 | 193 | 8.3e-08 | 32.1 | 0.13 | 140.0 | 2.5 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 2 | zf-RING_2 | 158 | 189 | 2.2e-06 | 27.3 | 2.5 | 2900.0 | -1.8 |
| pfu_aug2.0_1.1_03339.t1 | 2 | 2 | zf-C3HC4_3 | 163 | 191 | 1.8e-06 | 27.5 | 1.1 | 1300.0 | -0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03339.t1 | gi|260811644|ref|XP_002600532.1| | hypothetical protein BRAFLDRAFT_145043 [Branchiostoma floridae] | 1.0e-14 |
| pfu_aug2.0_1.1_03339.t1 | gi|260816735|ref|XP_002603243.1| | hypothetical protein BRAFLDRAFT_93307 [Branchiostoma floridae] | 2.0e-14 |
| pfu_aug2.0_1.1_03339.t1 | gi|676475497|ref|XP_009060492.1| | hypothetical protein LOTGIDRAFT_218987, partial [Lottia gigantea] | 7.0e-14 |
| pfu_aug2.0_1.1_03339.t1 | gi|260825466|ref|XP_002607687.1| | hypothetical protein BRAFLDRAFT_82867 [Branchiostoma floridae] | 7.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03339.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03339.t1 atggctgagcgggtggttcgcaatgtagaggaggactatcttatgtgcagtatttgcctggggagatatacagaacctaa attactaccctgtggtcatacgttctgtaagcggtgcttgacggaacacgtaaaacagacagtgcccggcagcacgtgta acaattttaaatgcccaaatgaccggcaacaaatctcaagaccgtccccggggccgctcaatccaaaggattgggccgac aaatttccgacggacacttttattagtaatttgctaacggcagtacgcatacacgagggaggaagtccgccagatgatga tacggcgcaaacggatgtatctgtcaatagcgcacctgcttcgtccccgcgacggagcgtaccgcggaggaacatacggc aaaattctgtacaaaacgagatgcagagaacagttgagatgtcgcgatacagccatctgaggggccctgcgtgtgaggag catcccgagcgagagcaggggttcttttgtctgggctgtagtatgttagtgtgtccgaattgtgccgtcagatcgcacag acgtcggacatgcgactgcgtcccgatagcagaagcaatgaccagattacagccaaagatacaaggtcttcggacgaagt tcgcggggcagatggagcgaattcaacaggttcatcaaaactcccaaccagacggaggcgttcttcaagctgccaagaca agatctctcaatactttgaatgaaatggaaagtaggttggggcggttctacgaaaatattcttcaacaaattgaagattc ccgaagacaaatcaacgaagccgtgcctgcgtcagtactagaaaatccgatgtcagaaaggattatgaacggagtagaat ttactccaaagcctgctttcgaaaactttattagaaatcagcagtccataggaacagtcaagatcggtaacggtacaaat agtacaagtggtaggcntgttcttcaagctgccaagacaagatctctcaatactttgaatgaaatggaaagtaggttggg acggttctacgaaaatattcttcaacaaattgaagattcccgaagacagatcaacgaagctgtgcctgcgtcagtgttag aaaatccgatgtcagaaaggattatgaacggagtgagatcgactcaatcgcttcttgaaaatcaagctgaaaacaatgaa atcgatatactcaaagatctacagcaaatggacaatcaagcaaaagaatatgacacagcaattcagtctttagaaaggaa catttctgcatttaaggtagaatttactccaaagcctgctttcgaaaactttattagaaatcagcagtccataggaacag tcaagatcggtaacggtacaaatagtacaagtggtaggcaaatcactaacggtacaaataatacacccggaaggcaaatg acaaacggatctatcagcaacggaagccaaaatcgacaggaaaatacacgaagcaatactatggaaaattcagtacggcc gacgcaaacacctcgaccgaaccgacaaccacctgcgagatctcgtcctgtccagcgaataacgagggttaattgtaaag atcctacgcaagatgtgaattcttggaaactaaccggaatcgctttcgtcggaacgactgcggttatcgctgatagtctt aatcacatgatcagacaagtaagtttgaatggatcagtcgccctgaaccaggtgcttccgctcgatcatgcgcagtcggt atgtaacacggacgttgaaacggaagtggccgttacacagccggagaaaagacagttatccataattgccgcagacagga gaggtggtcttcgcgtgaaagacattgtgcgaactttaaaatcttatgaagaaattgcctttttgccggcagacagattt gttgtgtcatcattgattggtcgaatgtcgatcgacgtcatcgatcaagctggtcatgtgcttaaatcattggaaaggtc gtaccagttcagaacacctagatttctttcagtcacttctactaataaaatcgttgtaagtgatcgcgacctaaaagaac ttgtttgtatcaacctagatggcagcactgactggacgatatcgacgcaaaattcgtttccgtgtggagtctcgtgtgat ttcacgggtaaaatctacctgtgtttagacaataacacagttgtcgttcttagtgaagatggctccttgctgcccaataa actcgttgaaatgggcgatggtttaaagacgccctatgcaatttgcgctaggcgaagacaagtagcggtcacagagcttg gatcaagcttatttgcgcctggaagtccttggttgtttgttattaatagtacatag |
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Protein
| Protein ID | pfu_aug2.0_1.1_03339.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03339.t1 MAERVVRNVEEDYLMCSICLGRYTEPKLLPCGHTFCKRCLTEHVKQTVPGSTCNNFKCPNDRQQISRPSPGPLNPKDWAD KFPTDTFISNLLTAVRIHEGGSPPDDDTAQTDVSVNSAPASSPRRSVPRRNIRQNSVQNEMQRTVEMSRYSHLRGPACEE HPEREQGFFCLGCSMLVCPNCAVRSHRRRTCDCVPIAEAMTRLQPKIQGLRTKFAGQMERIQQVHQNSQPDGGVLQAAKT RSLNTLNEMESRLGRFYENILQQIEDSRRQINEAVPASVLENPMSERIMNGVEFTPKPAFENFIRNQQSIGTVKIGNGTN STSGRXVLQAAKTRSLNTLNEMESRLGRFYENILQQIEDSRRQINEAVPASVLENPMSERIMNGVRSTQSLLENQAENNE IDILKDLQQMDNQAKEYDTAIQSLERNISAFKVEFTPKPAFENFIRNQQSIGTVKIGNGTNSTSGRQITNGTNNTPGRQM TNGSISNGSQNRQENTRSNTMENSVRPTQTPRPNRQPPARSRPVQRITRVNCKDPTQDVNSWKLTGIAFVGTTAVIADSL NHMIRQVSLNGSVALNQVLPLDHAQSVCNTDVETEVAVTQPEKRQLSIIAADRRGGLRVKDIVRTLKSYEEIAFLPADRF VVSSLIGRMSIDVIDQAGHVLKSLERSYQFRTPRFLSVTSTNKIVVSDRDLKELVCINLDGSTDWTISTQNSFPCGVSCD FTGKIYLCLDNNTVVVLSEDGSLLPNKLVEMGDGLKTPYAICARRRQVAVTELGSSLFAPGSPWLFVINST |
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