Gene
| Gene Model ID | pfu_aug2.0_1.1_03340 |
|---|---|
| Locus | scaffold1.1 : 480370 ... 482286 : + |
| To GenomeBrowser | scaffold1.1:480370..482286 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_72833.1_49143 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03340.t1 | 2 | 1 | zf-C3HC4_3 | 14 | 66 | 4.3e-07 | 29.5 | 2.9e-10 | 4.3e-07 | 29.5 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 1 | zf-RING_2 | 15 | 60 | 9.8e-08 | 31.7 | 6.6e-11 | 9.8e-08 | 31.7 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 1 | zf-C3HC4_2 | 16 | 59 | 3.5e-09 | 36.5 | 2.4e-12 | 3.5e-09 | 36.5 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 1 | zf-C3HC4 | 16 | 59 | 1.5e-08 | 34.1 | 1.0e-11 | 1.5e-08 | 34.1 |
| pfu_aug2.0_1.1_03340.t1 | 1 | 1 | zf-RING_UBOX | 16 | 59 | 8.5e-08 | 31.7 | 1.4e-10 | 2.1e-07 | 30.5 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 1 | zf-RING_5 | 16 | 58 | 3.7e-06 | 26.5 | 2.5e-09 | 3.7e-06 | 26.5 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 1 | zf-C3HC4_4 | 16 | 59 | 6.4e-06 | 25.9 | 4.3e-09 | 6.4e-06 | 25.9 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 2 | zf-RING_2 | 154 | 182 | 9.8e-08 | 31.7 | 0.54 | 800.0 | -0.1 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 2 | zf-C3HC4_2 | 155 | 190 | 3.5e-09 | 36.5 | 0.093 | 140.0 | 2.6 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 2 | zf-C3HC4 | 155 | 190 | 1.5e-08 | 34.1 | 10.0 | 15000.0 | -4.8 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 2 | zf-RING_5 | 155 | 188 | 3.7e-06 | 26.5 | 0.099 | 150.0 | 2.2 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 2 | zf-C3HC4_3 | 160 | 188 | 4.3e-07 | 29.5 | 0.62 | 920.0 | -0.4 |
| pfu_aug2.0_1.1_03340.t1 | 2 | 2 | zf-C3HC4_4 | 168 | 180 | 6.4e-06 | 25.9 | 9.3 | 14000.0 | -4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03340.t1 | gi|148229453|ref|NP_001088374.1| | tripartite motif containing 3 [Xenopus laevis] | 1.0e-15 |
| pfu_aug2.0_1.1_03340.t1 | gi|676496866|ref|XP_009067355.1| | hypothetical protein LOTGIDRAFT_170455 [Lottia gigantea] | 4.0e-15 |
| pfu_aug2.0_1.1_03340.t1 | gi|664730293|ref|XP_008522351.1| | PREDICTED: tripartite motif-containing protein 3 isoform X1 [Equus przewalskii] | 1.0e-14 |
| pfu_aug2.0_1.1_03340.t1 | gi|545222765|ref|XP_005612175.1| | PREDICTED: tripartite motif-containing protein 3 isoform X1 [Equus caballus] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03340.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03340.t1 atggcgcaaagagtggtaagaaatgttgaggaggattacttaatgtgcagtatatgcctcggacgttacacggagccaaa attactaccttgtggtcatacattctgcaaacagtgcttgtctgatcacatcactcaaactgtgtccaattcagattctc tgacattcaattgtccgaatgatagaacggaggttacccgtccagcagacgtgcaccccagggattgggctgataaattt ccgacggactctttcttggataatttgcttttagcagtacgtgttcatgagggcacggctccgcgggaagctctaaacca gcaaatggcgccaaatacctccaggcagacgacacaacgtccgcctcagcatcatgatcaagttgttgttcctacacaca gacgacgccagccagcgacaaatccacgtggtgcttccggttcacaaccacgtggtccgacgtgtgctgaacaccctgac agagaacaagggttttactgtttaggttgtaacattcttgtttgtccaagctgtgctgttcgaaaccacagaaaacggac atgtgaatgtttagaaattgagaacgcagtcgacagaatgcaaccaagaattcaagcattgagaacgaaatttgaatcgc agataaacagaatatatcaaataagtgagaatgccataccagatggcggaagtcttcagaacagtaaagcgcgtgcgcac caccaactcgacgacttagaaagcaaagcagaacttcccaaactggaaaaacagtcaaaggaatacgactccgctatgca gtcaacagaacgtaacctcgggaattttaaagtagattttgtccctcataccgcattttcaaattttcttaggaatccac ctccgattggaaacataaaagtttccggcggaaactatcagaattccggttttcagcaatctggtatatttaactttatt ccggtgaatgacgctcattctagatccgcatggatggatgacggagccaactcgtctagaagaccaggaagacaaaactt ctttagatag |
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Protein
| Protein ID | pfu_aug2.0_1.1_03340.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03340.t1 MAQRVVRNVEEDYLMCSICLGRYTEPKLLPCGHTFCKQCLSDHITQTVSNSDSLTFNCPNDRTEVTRPADVHPRDWADKF PTDSFLDNLLLAVRVHEGTAPREALNQQMAPNTSRQTTQRPPQHHDQVVVPTHRRRQPATNPRGASGSQPRGPTCAEHPD REQGFYCLGCNILVCPSCAVRNHRKRTCECLEIENAVDRMQPRIQALRTKFESQINRIYQISENAIPDGGSLQNSKARAH HQLDDLESKAELPKLEKQSKEYDSAMQSTERNLGNFKVDFVPHTAFSNFLRNPPPIGNIKVSGGNYQNSGFQQSGIFNFI PVNDAHSRSAWMDDGANSSRRPGRQNFFR |
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