Gene
| Gene Model ID | pfu_aug2.0_1.1_03341 |
|---|---|
| Locus | scaffold1.1 : 482710 ... 484866 : + |
| To GenomeBrowser | scaffold1.1:482710..484866 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_17374.1_69083 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03341.t1 | 3 | 1 | zf-C3HC4_3 | 14 | 66 | 4.3e-07 | 29.4 | 2.9e-10 | 4.3e-07 | 29.4 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 1 | zf-RING_2 | 15 | 60 | 5.1e-07 | 29.4 | 3.4e-10 | 5.1e-07 | 29.4 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 1 | zf-C3HC4_2 | 16 | 46 | 1.2e-08 | 34.8 | 8.2e-12 | 1.2e-08 | 34.8 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 1 | zf-C3HC4 | 16 | 59 | 2.9e-08 | 33.2 | 1.9e-11 | 2.9e-08 | 33.2 |
| pfu_aug2.0_1.1_03341.t1 | 1 | 1 | zf-RING_UBOX | 16 | 59 | 9.2e-08 | 31.6 | 1.5e-10 | 2.3e-07 | 30.4 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 1 | zf-RING_5 | 16 | 59 | 1.6e-06 | 27.7 | 1.1e-09 | 1.6e-06 | 27.7 |
| pfu_aug2.0_1.1_03341.t1 | 2 | 1 | zf-B_box | 31 | 43 | 3.5e-06 | 26.7 | 0.12 | 170.0 | 2.1 |
| pfu_aug2.0_1.1_03341.t1 | 2 | 2 | zf-B_box | 125 | 159 | 3.5e-06 | 26.7 | 2.4e-09 | 3.5e-06 | 26.7 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 2 | zf-C3HC4_2 | 128 | 164 | 1.2e-08 | 34.8 | 0.0013 | 2.0 | 8.5 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 2 | zf-C3HC4 | 128 | 164 | 2.9e-08 | 33.2 | 1.8 | 2700.0 | -1.9 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 2 | zf-C3HC4_3 | 128 | 164 | 4.3e-07 | 29.4 | 0.036 | 53.0 | 3.5 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 2 | zf-RING_2 | 128 | 158 | 5.1e-07 | 29.4 | 1.7 | 2500.0 | -1.7 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 2 | zf-RING_5 | 128 | 162 | 1.6e-06 | 27.7 | 0.3 | 440.0 | 0.6 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 3 | zf-C3HC4_2 | 568 | 588 | 1.2e-08 | 34.8 | 3.1 | 4600.0 | -2.3 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 3 | zf-C3HC4_3 | 568 | 589 | 4.3e-07 | 29.4 | 1.3 | 1900.0 | -1.5 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 3 | zf-RING_5 | 568 | 590 | 1.6e-06 | 27.7 | 1.1 | 1600.0 | -1.1 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 3 | zf-C3HC4 | 569 | 585 | 2.9e-08 | 33.2 | 0.95 | 1400.0 | -1.0 |
| pfu_aug2.0_1.1_03341.t1 | 3 | 3 | zf-RING_2 | 569 | 589 | 5.1e-07 | 29.4 | 1.6 | 2400.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03341.t1 | gi|260824808|ref|XP_002607359.1| | hypothetical protein BRAFLDRAFT_69765 [Branchiostoma floridae] | 2.0e-16 |
| pfu_aug2.0_1.1_03341.t1 | gi|260792738|ref|XP_002591371.1| | hypothetical protein BRAFLDRAFT_227329 [Branchiostoma floridae] | 3.0e-16 |
| pfu_aug2.0_1.1_03341.t1 | gi|260827663|ref|XP_002608784.1| | hypothetical protein BRAFLDRAFT_110072 [Branchiostoma floridae] | 1.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03341.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03341.t1 atggcagaaagagtggtacgaaacgtggagaatgactaccttatgtgtagtatatgtctcggacgttacacagaacctaa acttttaccatgtggacacacattttgtaaacaatgtctgtcagatcatattactctaacagtgaccgatagggcggcat caaccttcagctgtcctaacgataggacccaggtgaatcgtccgtctcccgggctgcatccaaggcaatgggcggaaaaa tttccaacagacactttcttgaagagtctattacaagcggtacaagtgtatgaaggctcgtcaactttagacaacagaac taatggtgatgtaggctgtcatcatgatactgatggtttccatcagcgtcaaaatggtcaagtttgtgctgagcatcctg atcgagctgttgagttcttctgtctaggatgcaatctccttgtttgtgcaaactgtgccgtgcgttcacataggagtggc agctgtgaatgtataacaatagcagaggctgttgaacgtatgcgtcctcgaattcaagcccttcggagaagattcgaaaa tcaaattcataagatcaaccaaatcaacgcaggtgaaattgtactacagtatattgaggatctacgtcagcaaatcagag aggcagggagagggttcatgtcggagaatcagcaactcaatattgttcttaacagcatagaatccacaaggcacgtgttc gaatctttgtgcaataacaacgctggtgtagaaattctgaatgatcttccaaaaatggaagcacaggccgatgagtttga cactgctacgatagcggcttcaactaattctggaaatcttagggtggatttcgttccacaaactgcttttacacatttct tacgaaatccacctccgattggttcgataaagatatcaccttcgaatgaaccacgaaatttcaatttcaatgttcagaat cagtttctgtcagcagcaacagcaagtgcctcagtcggtcaccaacgatccacgcagaattcaaatcaacgattaaatca acatcaaatgcagagacaagtatcgaatcaaagtgtgactgttcgtccaacacaaacacctagacctacacgacattctc aacgtcaacaaaggaacttgactaaaatcaatatcaaggttccatctgaaaatgtgacagcatggcagctgactggaatt gcctttgttggttcatctgtagttgccgtcgataacatgaataacatgctgcgacagataagcctgtcagggtcactagt aatgaaccagactttatgtcttgacaatcctctatcagtatgtaacgtaaataacccggtcgatgtcgccgtcacacaac cagaattacggcaaatctccattgtgacaacggaagggggtcttcgtgtgaaaaatgtaataagaactcacaaagcatac gaaggcattgcccacttaccagatggtcgtctggttgtctcgtgcgtaacgggtcgcatatcaattgacgtcattgagca aggtgggcgtgttctgaaatcgtttgagaggaaccatatatttcgttggcctcgattcctctcgttgacctcatcaggca atattctgataagcgatcgggaccaaaaacatctggtcagtttaagcttgaatggtcaagttgactggacatactcaacg ccctcgtctccatggggcgtggcatgtgatcaaaagtggcaaaatcttcctttgtctagacaacaatactgtccaaattc ttgccgaaaatggtga |
|
Protein
| Protein ID | pfu_aug2.0_1.1_03341.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03341.t1 MAERVVRNVENDYLMCSICLGRYTEPKLLPCGHTFCKQCLSDHITLTVTDRAASTFSCPNDRTQVNRPSPGLHPRQWAEK FPTDTFLKSLLQAVQVYEGSSTLDNRTNGDVGCHHDTDGFHQRQNGQVCAEHPDRAVEFFCLGCNLLVCANCAVRSHRSG SCECITIAEAVERMRPRIQALRRRFENQIHKINQINAGEIVLQYIEDLRQQIREAGRGFMSENQQLNIVLNSIESTRHVF ESLCNNNAGVEILNDLPKMEAQADEFDTATIAASTNSGNLRVDFVPQTAFTHFLRNPPPIGSIKISPSNEPRNFNFNVQN QFLSAATASASVGHQRSTQNSNQRLNQHQMQRQVSNQSVTVRPTQTPRPTRHSQRQQRNLTKINIKVPSENVTAWQLTGI AFVGSSVVAVDNMNNMLRQISLSGSLVMNQTLCLDNPLSVCNVNNPVDVAVTQPELRQISIVTTEGGLRVKNVIRTHKAY EGIAHLPDGRLVVSCVTGRISIDVIEQGGRVLKSFERNHIFRWPRFLSLTSSGNILISDRDQKHLVSLSLNGQVDWTYST PSSPWGVACDQKWQNLPLSRQQYCPNSCRKW |
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