Gene
| Gene Model ID | pfu_aug2.0_1.1_03345 |
|---|---|
| Locus | scaffold1.1 : 548373 ... 575157 : - |
| To GenomeBrowser | scaffold1.1:548373..575157 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_24790.1_69661 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03345.t1 | 1 | 1 | VIT_2 | 36 | 111 | 1.5e-11 | 43.5 | 2.2e-14 | 4.0e-11 | 42.2 |
| pfu_aug2.0_1.1_03345.t1 | 1 | 1 | VIT | 44 | 160 | 1.2e-17 | 63.6 | 1.4e-20 | 2.5e-17 | 62.6 |
| pfu_aug2.0_1.1_03345.t1 | 1 | 1 | VWA_2 | 589 | 749 | 1.4e-15 | 57.8 | 2.1e-18 | 3.9e-15 | 56.3 |
| pfu_aug2.0_1.1_03345.t1 | 1 | 1 | VWA_3 | 590 | 741 | 6.1e-26 | 90.9 | 7.1e-29 | 1.3e-25 | 89.8 |
| pfu_aug2.0_1.1_03345.t1 | 1 | 1 | VWA | 590 | 749 | 1.2e-15 | 57.6 | 1.8e-18 | 3.4e-15 | 56.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03345.t1 | gi|156395736|ref|XP_001637266.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_1.1_03345.t1 | gi|597746311|ref|XP_007235172.1| | PREDICTED: von Willebrand factor A domain-containing protein 5A-like isoform X2 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_1.1_03345.t1 | gi|597746309|ref|XP_007235171.1| | PREDICTED: von Willebrand factor A domain-containing protein 5A-like isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_1.1_03345.t1 | gi|340368970|ref|XP_003383022.1| | PREDICTED: von Willebrand factor A domain-containing protein 5A-like [Amphimedon queenslandica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03345.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03345.t1 atggcaaccacttcccgtccaagaaaaatggcaggacgtcccggaccctgtgtaatacgtagaccctctgctgtaaggaa cagttcaattcgaattataaaatgtggcttgctgatcaacgagaaaggaaatcaagtctccttgaaagaaataaaaactg aagtgtctatcaaaggatttatagctaatgtagagtctaagttggagtacttcaatagagggccggtagccgtagaagcg gagtttgtgtttcccctggacagtaagactgctgtttataattatgaagctgaaattaacggtagacacatagttgccga atgccaggaacaagcagaggcaattgaaacctacaaagatgctattgattctggacattcagccatgctcttgtcagagg aagaaaatgccggtgacgtgttcaaactgaggctgggtaaccttgatgctcactctaaggctgtgttaacattctcatac gtagtggaacttgacgtagaagttcatggtaccatcaggtttaccttaccaactgtcctatgtcctagatatactccaga taatgagtcccttaatggagatgaccaagacgcagcatcacagaatgcaaagacacctgtcttaagctcacctgatgcca gcacgcaatacggaagtggaaaattcaaaatgtctttttccgcctccgtcagtggtggatataagatcaataaaataaca tcacagaatgacgacgtctctgtcagtttggaaggaaacaaaactgatgcaaaagttagcctgaaagaatcattcaagcg tgaccatgatctgagctttgacattcagtacaaagactttgacaaaccagagattgtacttgagaaaggaatccctgata aaggtaaggttaagattgtactggagaaagaaatccctgataaaggtaaggttagtattgtactggagaaaggaatatct gataaaggtaagattagtattgtactggagaaaggaatctctgatataggtaaggataagattgtacttaagaaaggaat ctctgataatggtaaggttaagattgtacttgagaaaggaatctctgataaaggtaaggttaagattgtactggagaaag gaatctctgatataggtcaggttgagattgtactggacgaaagaatctccgataaaggtaaggttaagattgtactggac gaaagaatctccgataaaggggatttcatgggtagtgatgtgttgatgctgaatttcttaccaagttggtcagagataac ccaggacactgcagaaatgaaatgtgaatttatatttgttatcgacagatcagggaaaagatacttagcttctgacttca actgcactaacagatacatagacgatgtgttgtcaatcaataatccaaaattagcagattacctcagcagaatctatcct tcggagcttgaagtcaaagaagctacagagacaaataattcagcatcctatttgaacataatgttgtccttagacactga tggtcacacgaacacctcactgttaataatgcactggggaatggaatctcagataaaggttaagattatactggagaaag gaatccctgataaaggtaaggttcctgataaaggtaagggtaagatggtactggagaaaggaatccctgataaaggggat ttcattggtagtgatgtgttgatgctgaattttttaccaagttggtcagagataacccaggacacagaagaaatgaaatg tgaatttatatttgtcatcgacagatcaggttctatgggtggaagcagaatgaagaaggccaaggaggccctgtttctaa tgctgaaaagtttaccaatggactgctactttaacatagtctgctttggaagcacttactcagttctgtctcaacagagt caaaaatacaatactgaaactctgaatgaagccctgtcactacaggaaaagatggatgcagacatgggaggaacagaaat actgaaacctctacaatatatatataaaaagaaacctattaaaggttatagtagacagatcttcctgtttacagatggag cagtttcaaacacccagaatgtggtcaagttaatcagagaaaatgcatcgtccacacgggttttcacatttggaatcggg gacggctgttccacagagttaatacgtcagggagcatgcgtgagtcagggtgcggcaacgtttgtcaaggacactgaacg actccaaactaaggtgatgtctgtcttgaagaaatctatgacaaagccaataacagacctctcagtgaaatttgacttac cgtccgaagttcaacatacaatggtaccagctgatctgccgtgcttattccagggagacaagcttctgttgtacacagta ctgaatggcgacacaaaggtaccatatgactcctccctgactttgtctgctgtgtgtggcgatcagaagataagccacaa agtgagctttgacctgagtaaagtggaatcatcaagtgggtcggcaccacttcatagattggctgctaaagctcaattag aacttatggaacagatagaagagatggggaaaacaccatttggtggtaaaactgatcctgatgctagcatggtgaccatc agtaaggcagccaacatagtgtgtcgtcacacggcgttcgtaggtgtggataaagaaagcaaagtcaaagatatgttaat aactgctacctacactaacggcatttataggactggagtacgatcactacatggctcagtgcctataaggagtagtggag ttagaacaggtacagtagaatctaacttacagtcagtgactcttaaatatgttcctctgccatatcatccaaaaagcatc tatcaggacctgcccactctcccaatctgtccgtag |
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Protein
| Protein ID | pfu_aug2.0_1.1_03345.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03345.t1 MATTSRPRKMAGRPGPCVIRRPSAVRNSSIRIIKCGLLINEKGNQVSLKEIKTEVSIKGFIANVESKLEYFNRGPVAVEA EFVFPLDSKTAVYNYEAEINGRHIVAECQEQAEAIETYKDAIDSGHSAMLLSEEENAGDVFKLRLGNLDAHSKAVLTFSY VVELDVEVHGTIRFTLPTVLCPRYTPDNESLNGDDQDAASQNAKTPVLSSPDASTQYGSGKFKMSFSASVSGGYKINKIT SQNDDVSVSLEGNKTDAKVSLKESFKRDHDLSFDIQYKDFDKPEIVLEKGIPDKGKVKIVLEKEIPDKGKVSIVLEKGIS DKGKISIVLEKGISDIGKDKIVLKKGISDNGKVKIVLEKGISDKGKVKIVLEKGISDIGQVEIVLDERISDKGKVKIVLD ERISDKGDFMGSDVLMLNFLPSWSEITQDTAEMKCEFIFVIDRSGKRYLASDFNCTNRYIDDVLSINNPKLADYLSRIYP SELEVKEATETNNSASYLNIMLSLDTDGHTNTSLLIMHWGMESQIKVKIILEKGIPDKGKVPDKGKGKMVLEKGIPDKGD FIGSDVLMLNFLPSWSEITQDTEEMKCEFIFVIDRSGSMGGSRMKKAKEALFLMLKSLPMDCYFNIVCFGSTYSVLSQQS QKYNTETLNEALSLQEKMDADMGGTEILKPLQYIYKKKPIKGYSRQIFLFTDGAVSNTQNVVKLIRENASSTRVFTFGIG DGCSTELIRQGACVSQGAATFVKDTERLQTKVMSVLKKSMTKPITDLSVKFDLPSEVQHTMVPADLPCLFQGDKLLLYTV LNGDTKVPYDSSLTLSAVCGDQKISHKVSFDLSKVESSSGSAPLHRLAAKAQLELMEQIEEMGKTPFGGKTDPDASMVTI SKAANIVCRHTAFVGVDKESKVKDMLITATYTNGIYRTGVRSLHGSVPIRSSGVRTGTVESNLQSVTLKYVPLPYHPKSI YQDLPTLPICP |
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