Gene
| Gene Model ID | pfu_aug2.0_1.1_03348 |
|---|---|
| Locus | scaffold1.1 : 641048 ... 654949 : + |
| To GenomeBrowser | scaffold1.1:641048..654949 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_23047.1_54866 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cyclic amp-dependent transcription factor atf-6 alpha | GO:0005515 GO:0005634 GO:0005789 GO:0005794 GO:0016021 GO:0030968 GO:0043565 GO:0044212 GO:0044267 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03348.t1 | 3 | 1 | bZIP_1 | 195 | 256 | 7.6e-12 | 45.0 | 5.6e-15 | 7.6e-12 | 45.0 |
| pfu_aug2.0_1.1_03348.t1 | 2 | 1 | bZIP_2 | 198 | 247 | 3.2e-07 | 30.0 | 2.4e-10 | 3.2e-07 | 30.0 |
| pfu_aug2.0_1.1_03348.t1 | 2 | 2 | bZIP_2 | 239 | 263 | 3.2e-07 | 30.0 | 0.0072 | 9.6 | 6.1 |
| pfu_aug2.0_1.1_03348.t1 | 3 | 2 | bZIP_1 | 240 | 262 | 7.6e-12 | 45.0 | 0.0091 | 12.0 | 5.9 |
| pfu_aug2.0_1.1_03348.t1 | 3 | 3 | bZIP_1 | 349 | 351 | 7.6e-12 | 45.0 | 2.3 | 3200.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03348.t1 | gi|676491082|ref|XP_009065480.1| | hypothetical protein LOTGIDRAFT_236404 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1.1_03348.t1 | gi|527257913|ref|XP_005147220.1| | PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha [Melopsittacus undulatus] | 9.80909e-45 |
| pfu_aug2.0_1.1_03348.t1 | gi|584087075|ref|XP_006763243.1| | PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha [Myotis davidii] | 3.99931e-42 |
| pfu_aug2.0_1.1_03348.t1 | gi|327270223|ref|XP_003219889.1| | PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha [Anolis carolinensis] | 3.99931e-42 |
| pfu_aug2.0_1.1_03348.t1 | gi|675779676|ref|XP_008976480.1| | PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2 [Pan paniscus] | 3.99931e-42 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03348.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03348.t1 atggcgttcgtatcagaagttgacagaaaattctactccaataacctcttaacaaatgaagattgggaaccttcatcaat ggatcttacagatatacttggagttgatgaacacctgggaccacaggaccttgtggcagagctaccagacgatcttatga attctctacacaaagacttgttcccagatccggcgatacagctcccagatccttcattacaagatggattactccatgac cttagtgacagtagctcagatagtggagttagtggtgtgatgatgaattacgacggcccgtctcatgatgttaagcagga accactatctccccgctctccggctttatccttctcatcagaaaactctgactcacaatattataaaattcattttatgg gccaagggaagcaactagtgctaacaccagatgagttcaaacgtttaacgtctcaaggattgctgaaatttcaaaatcct tcgcagggaaccaaagcatcacttaccaatcctacacatgttgtcgctccatcttctacatttgtatcagcaaaccccat actacaagttgacaatgagattaaagctataaaacgtcagcaaagaatgatcaagaacagagaatcagcaagtctgtcca ggaaaagaaagaaagagtatttaactcagttggagcagcaacttcaagaatctacaacacaaaatcaaagactcaaggag gagaacgagtcactgaagagaaaactgtcgtacattcagaatgagaatgatgagttgaagaagacagtgtccgtctctcc gtccaaacgtgtatgtctgatggcagtattccttatcttcagcttgaatgttgtacagttcagtgactacctattgacag ataagatcaaaagatctcattcaaactcagaaataccggctcacaagagcagacaactcttgtctgtactaaacgatgag gacagttattctgtagggaaattttatgcctccagcaaacttgctgaacagctatctggttggatgcaaagtgtcaaaaa ggaaaaagaaaagaaacaacctttgaaagaaaagaaaaatgcagaaaaacacagacgacgtttttctcccgttcaagcag ccattagaggaaacgcagatagattttcaagacacgccttgagaggaggggactatcagtaccaagtacaagtttatgat ggtgtaaacaatggtaacttctggaattcagtgccgagaagaaacgatacattctatgtactttcttttagtacggatta ttttttagtgccagctacagcacacaacaagaccatgagacctagaatgtcattggtcatgcctgcagtagctctaaatg gttctatgcacccccctcctggtaatgtagggatgatgcagattgactgtgaggtactcaatacgcaacttatacacgtc cacaagtcagccctccctaaacagacgtggcacagaaatggcacattccacgatggctacagaccctga |
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Protein
| Protein ID | pfu_aug2.0_1.1_03348.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03348.t1 MAFVSEVDRKFYSNNLLTNEDWEPSSMDLTDILGVDEHLGPQDLVAELPDDLMNSLHKDLFPDPAIQLPDPSLQDGLLHD LSDSSSDSGVSGVMMNYDGPSHDVKQEPLSPRSPALSFSSENSDSQYYKIHFMGQGKQLVLTPDEFKRLTSQGLLKFQNP SQGTKASLTNPTHVVAPSSTFVSANPILQVDNEIKAIKRQQRMIKNRESASLSRKRKKEYLTQLEQQLQESTTQNQRLKE ENESLKRKLSYIQNENDELKKTVSVSPSKRVCLMAVFLIFSLNVVQFSDYLLTDKIKRSHSNSEIPAHKSRQLLSVLNDE DSYSVGKFYASSKLAEQLSGWMQSVKKEKEKKQPLKEKKNAEKHRRRFSPVQAAIRGNADRFSRHALRGGDYQYQVQVYD GVNNGNFWNSVPRRNDTFYVLSFSTDYFLVPATAHNKTMRPRMSLVMPAVALNGSMHPPPGNVGMMQIDCEVLNTQLIHV HKSALPKQTWHRNGTFHDGYRP |
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