Gene
| Gene Model ID | pfu_aug2.0_1.1_03361 |
|---|---|
| Locus | scaffold1.1 : 926558 ... 933563 : + |
| To GenomeBrowser | scaffold1.1:926558..933563 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_2367.1_44352 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| comm domain-containing protein 3-like | GO:0005488 GO:0043229 GO:0044238 GO:0044260 GO:0044763 GO:0048731 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03361.t1 | 1 | 1 | HCaRG | 18 | 121 | 3.2e-16 | 59.3 | 2.5e-20 | 3.7e-16 | 59.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03361.t1 | gi|524882916|ref|XP_005098094.1| | PREDICTED: COMM domain-containing protein 3-like [Aplysia californica] | 2.0e-39 |
| pfu_aug2.0_1.1_03361.t1 | gi|676436018|ref|XP_009047745.1| | hypothetical protein LOTGIDRAFT_238259 [Lottia gigantea] | 3.0e-29 |
| pfu_aug2.0_1.1_03361.t1 | gi|585666319|ref|XP_006817084.1| | PREDICTED: COMM domain-containing protein 3-like [Saccoglossus kowalevskii] | 3.0e-22 |
| pfu_aug2.0_1.1_03361.t1 | gi|115764796|ref|XP_788467.2| | PREDICTED: COMM domain-containing protein 3 [Strongylocentrotus purpuratus] | 7.0e-20 |
| pfu_aug2.0_1.1_03361.t1 | gi|674047702|ref|XP_008829940.1| | PREDICTED: COMM domain-containing protein 3 [Nannospalax galili] | 1.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03361.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03361.t1 atggagctttcacattctgtgacagagagtattgccatagccggagactcggctcacattccagataagctgttcccaaa ttttgttgatgttgcatttagaggaattctcactgaaaacgaaagaaacgtaatagcagataatccagcattttcaggtg tggataaagcggttctaaaagagggatattctgctatcgtcagtcttatattagaggcagtgaagcatgacacaaatgca gagtccctcagtggaatccttgaagattgcaagtttactagtgaacgaataaaagtatttgtcaaaacatatcaggaaag aaagcaatatgtacagcttctccttggaaagtcccaggtaacccagaattacaagaagtacaattttcatgctccctag |
|
Protein
| Protein ID | pfu_aug2.0_1.1_03361.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03361.t1 MELSHSVTESIAIAGDSAHIPDKLFPNFVDVAFRGILTENERNVIADNPAFSGVDKAVLKEGYSAIVSLILEAVKHDTNA ESLSGILEDCKFTSERIKVFVKTYQERKQYVQLLLGKSQVTQNYKKYNFHAP |
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