Gene
| Gene Model ID | pfu_aug2.0_1.1_03362 |
|---|---|
| Locus | scaffold1.1 : 936411 ... 949702 : - |
| To GenomeBrowser | scaffold1.1:936411..949702 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_2367.1_44351 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tnf receptor-associated factor 2-like isoform x1 | GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03362.t1 | 1 | 1 | zf-C3HC4 | 31 | 70 | 2.6e-06 | 26.9 | 2.3e-09 | 2.6e-06 | 26.9 |
| pfu_aug2.0_1.1_03362.t1 | 4 | 1 | zf-C3HC4_4 | 31 | 70 | 1.0e-05 | 25.2 | 9.1e-09 | 1.0e-05 | 25.2 |
| pfu_aug2.0_1.1_03362.t1 | 4 | 2 | zf-C3HC4_4 | 64 | 79 | 1.0e-05 | 25.2 | 0.041 | 47.0 | 3.9 |
| pfu_aug2.0_1.1_03362.t1 | 3 | 1 | zf-TRAF | 102 | 122 | 2.4e-15 | 56.6 | 0.39 | 440.0 | 1.3 |
| pfu_aug2.0_1.1_03362.t1 | 3 | 2 | zf-TRAF | 122 | 175 | 2.4e-15 | 56.6 | 2.0e-11 | 2.3e-08 | 34.2 |
| pfu_aug2.0_1.1_03362.t1 | 4 | 3 | zf-C3HC4_4 | 132 | 136 | 1.0e-05 | 25.2 | 4.2 | 4800.0 | -2.5 |
| pfu_aug2.0_1.1_03362.t1 | 4 | 4 | zf-C3HC4_4 | 160 | 180 | 1.0e-05 | 25.2 | 4.4 | 5000.0 | -2.6 |
| pfu_aug2.0_1.1_03362.t1 | 3 | 3 | zf-TRAF | 175 | 219 | 2.4e-15 | 56.6 | 3.9e-12 | 4.5e-09 | 36.5 |
| pfu_aug2.0_1.1_03362.t1 | 1 | 1 | MATH | 383 | 524 | 1.2e-23 | 83.5 | 2.5e-26 | 2.9e-23 | 82.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03362.t1 | gi|657547618|ref|XP_008278833.1| | PREDICTED: TNF receptor-associated factor 2-like [Stegastes partitus] | 0.0 |
| pfu_aug2.0_1.1_03362.t1 | gi|658865391|ref|XP_008415551.1| | PREDICTED: TNF receptor-associated factor 2-like isoform X1 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_1.1_03362.t1 | gi|584005252|ref|XP_006797624.1| | PREDICTED: TNF receptor-associated factor 2-like isoform X1 [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_1.1_03362.t1 | gi|542257979|ref|XP_003459057.2| | PREDICTED: TNF receptor-associated factor 2-like [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_1.1_03362.t1 | gi|617418801|ref|XP_007557785.1| | PREDICTED: TNF receptor-associated factor 2-like [Poecilia formosa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03362.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03362.t1 atgaacgaggcagaagcgcgcggagagactccaatggaagtcgggtatccgacggagatatttccccagggattcgatga gaagctgatttgtaacagctgtaacaaagtgctgaaggaccccgttcagagttattgtggtcataggttctgtaaaccat gcatcaacagagaaatgagtaaaggccaacatgtacgctgtcagacatgcatccgagaaggagctgaagaagaggactac agcatgatcagcaaagatcacatatttcctgacaatgcactcagacgtgagatgttcagcatggaagcaacatgtctgaa tcaaggatgtaattggtctggcaaattccgacatttcgagaaacacgccaacgaatgcaagttcaaaccagtgacatgcc aacaatgccatggattggttgaagcttccagatacaagcatcacctcggaaatgattgcccaaaacgaccaatcaaatgt cagtactgcaaagaggatttttatgcagagatatacgaggcccacaagttagaatgtccaaagtttccagtgaaatgtga tgactgcggaaagaagaagctgactagagatatgttgcaacatcactataacaacgagtgttcccagaggaagattacat gtcctgcgggatgtgatcctgtagaacgtagcaggttcttgactcaccttgatcagaaatccgggttccatctaaacttc atcatggagcaactcaaaattctgactcaagaaatcaatacaaaagtcggtcagttagctccaatgtcggaaatcttaca actgaaacaaaacgtggagcaactccaagtaagattacaacaagtaggaggaccaatacctcccgggagtgaggacaacg cagtcatgcagcaacgatgccgagctcttgaattaaaagtgagtacgtttgagggaatcgtcaccacgctgcatcgggaa attgagaggtgtctcacccatcttgatggcatagaaagggggaactctggtaactcgggaccagtggcacaaagagtgga gcaactggaacgtgctcttgcacagaaagacaaagaaaatatggaattgaaacagtacattgatgacaaattgtccgcca cttacgatggagaacacgtatggagaatagaaaactggtcaaagttacgtaaggatgctatgtcaggaatgaggaccagc atattctctgtacccttttatacaagcagacatggatataaaatgtgtgttagattatatccaaacggcgatggtatggg tcgggggacgcatatatcggtgttctttgtggtgatgatgggggattacgaccccgtactcaaatggccattcaaacatc gggtcacattcagattggtcaaccagaataatgacgaacaggatcaaacagactctttcagacctgaccctaacagcagc agctttaagaagcccacgtcagaaatgaatatagctagcgggtgtccgctcttcataccacttacaaaaattaatgacgc tagcagtggttttgtaacaaatgacgttctttttctaaaaacaacagtgacgttgaactcttga |
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Protein
| Protein ID | pfu_aug2.0_1.1_03362.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03362.t1 MNEAEARGETPMEVGYPTEIFPQGFDEKLICNSCNKVLKDPVQSYCGHRFCKPCINREMSKGQHVRCQTCIREGAEEEDY SMISKDHIFPDNALRREMFSMEATCLNQGCNWSGKFRHFEKHANECKFKPVTCQQCHGLVEASRYKHHLGNDCPKRPIKC QYCKEDFYAEIYEAHKLECPKFPVKCDDCGKKKLTRDMLQHHYNNECSQRKITCPAGCDPVERSRFLTHLDQKSGFHLNF IMEQLKILTQEINTKVGQLAPMSEILQLKQNVEQLQVRLQQVGGPIPPGSEDNAVMQQRCRALELKVSTFEGIVTTLHRE IERCLTHLDGIERGNSGNSGPVAQRVEQLERALAQKDKENMELKQYIDDKLSATYDGEHVWRIENWSKLRKDAMSGMRTS IFSVPFYTSRHGYKMCVRLYPNGDGMGRGTHISVFFVVMMGDYDPVLKWPFKHRVTFRLVNQNNDEQDQTDSFRPDPNSS SFKKPTSEMNIASGCPLFIPLTKINDASSGFVTNDVLFLKTTVTLNS |
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