Gene
| Gene Model ID | pfu_aug2.0_1.1_03369 |
|---|---|
| Locus | scaffold1.1 : 1034099 ... 1038702 : - |
| To GenomeBrowser | scaffold1.1:1034099..1038702 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug1.0_20470.1_04085 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s ribosomal protein l35 | GO:0003735 GO:0006412 GO:0009790 GO:0016020 GO:0022625 GO:0044822 GO:0051726 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1.1_03369.t1 | 2 | 1 | Ribosomal_L29 | 6 | 63 | 6.4e-22 | 77.0 | 2.6e-25 | 6.4e-22 | 77.0 |
| pfu_aug2.0_1.1_03369.t1 | 2 | 2 | Ribosomal_L29 | 102 | 102 | 6.4e-22 | 77.0 | 0.61 | 1500.0 | -1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1.1_03369.t1 | gi|558122012|ref|XP_006114382.1| | PREDICTED: 60S ribosomal protein L35 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_1.1_03369.t1 | gi|556949550|ref|XP_005987389.1| | PREDICTED: 60S ribosomal protein L35 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1.1_03369.t1 | gi|530565815|ref|XP_005279457.1| | PREDICTED: 60S ribosomal protein L35 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_1.1_03369.t1 | gi|334311498|ref|XP_001371906.2| | PREDICTED: 60S ribosomal protein L35 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_1.1_03369.t1 | gi|345309147|ref|XP_001516146.2| | PREDICTED: 60S ribosomal protein L35 [Ornithorhynchus anatinus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1.1_03369.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03369.t1 atggccaaggtcaaggctaaagagctgaggggaaagaagaaagaagagcttgtaaaacagctggacgaactcaaaaatga attgggaaccctcagagtggccaaagttactggtggagcagcatctaaattatctaaaatacgagtggtgaggaagtcca ttgcccgtgttttgacagtaattcatcagactcagaaagataacctgaggaaatactacaaatctaagaagttcaagccc aaggacatccgagctaagaagacgagggccatgagacgagctctcaccccatacgaaaagagcctcaaaactaagaagca acttaggaaagagagactttatcccatgaggaaatttgctgtcaaagaataa |
|
Protein
| Protein ID | pfu_aug2.0_1.1_03369.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1.1_03369.t1 MAKVKAKELRGKKKEELVKQLDELKNELGTLRVAKVTGGAASKLSKIRVVRKSIARVLTVIHQTQKDNLRKYYKSKKFKP KDIRAKKTRAMRRALTPYEKSLKTKKQLRKERLYPMRKFAVKE |
|