Gene
| Gene Model ID | pfu_aug2.0_10.1_00001 |
|---|---|
| Locus | scaffold10.1 : 1 ... 7985 : - |
| To GenomeBrowser | scaffold10.1:1..7985 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug1.0_2189.1_51558 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| succinate dehydrogenase | GO:0005743 GO:0006099 GO:0006105 GO:0007399 GO:0008177 GO:0022904 GO:0050660 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10.1_00001.t1 | 1 | 1 | FAD_binding_2 | 74 | 309 | 0.0 | 246.8 | 0.0 | 0.0 | 246.6 |
| pfu_aug2.0_10.1_00001.t1 | 2 | 1 | GIDA | 74 | 107 | 2.0e-06 | 26.9 | 1.4e-06 | 0.0026 | 16.7 |
| pfu_aug2.0_10.1_00001.t1 | 1 | 1 | Pyr_redox_2 | 74 | 270 | 2.1e-06 | 27.7 | 4.1e-08 | 7.6e-05 | 22.6 |
| pfu_aug2.0_10.1_00001.t1 | 2 | 2 | GIDA | 229 | 286 | 2.0e-06 | 26.9 | 0.00059 | 1.1 | 8.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10.1_00001.t1 | gi|524896638|ref|XP_005104791.1| | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_10.1_00001.t1 | gi|676486513|ref|XP_009064001.1| | hypothetical protein LOTGIDRAFT_221335 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_10.1_00001.t1 | gi|115647100|ref|XP_801853.2| | 0.0 | |
| pfu_aug2.0_10.1_00001.t1 | gi|348512410|ref|XP_003443736.1| | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform 2 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_10.1_00001.t1 | gi|148229707|ref|NP_001080770.1| | succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial precursor [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10.1_00001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00001.t1 atgacaaactgtcgtcgatcagaggaaagtcggaagagaagaagaggtgaaaccaggcttagaggggattttaaggggca ggaggactggttatcaaaagcagtcaaaccactagtatcatgtcaaagagactttcatttcaaaatctttggacagaatc aaggatctaaaacgggtgaaaagatttccaatgactaccccgtcgttgatcacacatttgatgcagttgttgtcggtgcc ggaggggcgggacttagagctgcctttggattggccaatgaaggatttaatacagcatgtatcacaaaactcttccccac aagatcacacacagtggcagctcagggaggtataaatgctgctatgggccacatggaggaagaccattggcattaccatt tctacgacacagtgaagggatctgattggctgggagaccaagacgctattcattacatgtgtgaagaggcacctaaagct gttattgagcttgagaactatggcatgcctttcagtcgtcttgagaatggtaagatttaccagagagctttcggaggaca gagtattaactacggtaaaggtggacaagctcatagatgttgttgtgtggccgacagaactggacattcactattacaca cactgtatggacggtctttgaaatatgacacaaaatacttcatagagtactttgccctggatcttataatggaagatggt gaatgtagaggagtgactgccctttgtttggaggacggcacaatccatagatttaaatccaagaataccattttggctac tggaggttatggtagatcgtatttctcgtgtacctccgcccacacgtgtaccggagatggtacagctatggtatccaggg ctggacttcctaatgaagacatggagtttgtacagttccatcccacag |
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Protein
| Protein ID | pfu_aug2.0_10.1_00001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00001.t1 MTNCRRSEESRKRRRGETRLRGDFKGQEDWLSKAVKPLVSCQRDFHFKIFGQNQGSKTGEKISNDYPVVDHTFDAVVVGA GGAGLRAAFGLANEGFNTACITKLFPTRSHTVAAQGGINAAMGHMEEDHWHYHFYDTVKGSDWLGDQDAIHYMCEEAPKA VIELENYGMPFSRLENGKIYQRAFGGQSINYGKGGQAHRCCCVADRTGHSLLHTLYGRSLKYDTKYFIEYFALDLIMEDG ECRGVTALCLEDGTIHRFKSKNTILATGGYGRSYFSCTSAHTCTGDGTAMVSRAGLPNEDMEFVQFHPT |
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