Gene
| Gene Model ID | pfu_aug2.0_10.1_00002 |
|---|---|
| Locus | scaffold10.1 : 12991 ... 34835 : - |
| To GenomeBrowser | scaffold10.1:12991..34835 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug1.0_2189.1_51557 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| niemann-pick c1 protein | GO:0006810 GO:0007275 GO:0012505 GO:0033036 GO:0042221 GO:0043231 GO:0044237 GO:0044425 GO:0044444 GO:0044763 GO:0048856 GO:0051716 GO:1902578 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10.1_00002.t1 | 3 | 1 | Sterol-sensing | 274 | 291 | 0.0 | 181.2 | 4.0 | 15000.0 | -10.0 |
| pfu_aug2.0_10.1_00002.t1 | 2 | 1 | Patched | 594 | 941 | 0.0 | 288.4 | 0.0 | 0.0 | 185.0 |
| pfu_aug2.0_10.1_00002.t1 | 3 | 2 | Sterol-sensing | 690 | 842 | 0.0 | 181.2 | 0.0 | 0.0 | 181.2 |
| pfu_aug2.0_10.1_00002.t1 | 2 | 1 | MMPL | 695 | 829 | 5.5e-07 | 28.6 | 1.5e-10 | 5.5e-07 | 28.6 |
| pfu_aug2.0_10.1_00002.t1 | 2 | 2 | Patched | 1074 | 1297 | 0.0 | 288.4 | 3.7e-35 | 1.4e-31 | 109.2 |
| pfu_aug2.0_10.1_00002.t1 | 2 | 2 | MMPL | 1150 | 1212 | 5.5e-07 | 28.6 | 4.0 | 15000.0 | -10.1 |
| pfu_aug2.0_10.1_00002.t1 | 3 | 3 | Sterol-sensing | 1165 | 1291 | 0.0 | 181.2 | 0.0025 | 9.3 | 5.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10.1_00002.t1 | gi|524881653|ref|XP_005097476.1| | PREDICTED: niemann-Pick C1 protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_10.1_00002.t1 | gi|348500675|ref|XP_003437898.1| | PREDICTED: niemann-Pick C1 protein-like [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_10.1_00002.t1 | gi|586530356|ref|XP_006920089.1| | PREDICTED: niemann-Pick C1 protein isoform X1 [Pteropus alecto] | 0.0 |
| pfu_aug2.0_10.1_00002.t1 | gi|586452526|ref|XP_006835182.1| | PREDICTED: niemann-Pick C1 protein [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_10.1_00002.t1 | gi|562858523|ref|XP_006157727.1| | PREDICTED: niemann-Pick C1 protein [Tupaia chinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10.1_00002.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00002.t1 atgactgaatggaaaatgacaagtgtcctgatttcacttttatttgtgattatgtgtcatcatgtgcaagtccaggcaga ggatgggcagtgtatatggtatggtgaatgtgggacgtctcctactgggaaacttaactgtctgtacgaggggccggcaa agaagctcaccgaccctacggggctacatctcttacaaacctactgtccagatctctacaaaggagatgacaacacatac acatgctgtgacacacatcagttgatcactatagagggtaacatggggcttccccagcagttcttcaccagatgtccctc ctgctacaacaacttcctcaatctatactgctacatgacatgcggtcgaaatcagagtaattacgtcaccctgaacacca cagctccacctgtcatcaattctgtaaactattatgttacgcaccaatatgcatatggaatgtacaactcctgtaaggat gtacagatgcccagtgctaacaccaaagccatctctgttttctgtggtaccacagctgagaagtgctcaccacctgtctg gctgacatacatgggtcaaacggctaatggccacgccccttttgacatatatttccatattgggtatgagaagaatataa cagtaaatggcagtgttgtgttgcctatggattaccagactactccatgtgacaagtcttatgctaacaaatctgcctgc agttgtcaggattgcgagtcgtcctgtatccctgtcccacctccgccacctccaaaacagccgtgtactgtcctcaagat cgactgctggtacttcagtatgttcatcatctacctggcctttgcattgttcttcttgatgtacgtcatctgctacagta tcataaaacagaactctctaggcgttactgagaacagcaggtatgaggagatcagcagtgaagatgagaactgctgtgag tctgtttactccgtcaatggaagtggtcgaccaatcaaaggaaagaaaagacgagctggagccgtaccagtgaattcctt accagacttgacacacgcagaccttggctgtttggagaaattaggagctcacttggaaaaggttcttcaaaactttttca ccaagtggggtacgttttgtgcccggcatccagcagtcatcatcttttttgggcttgctgtagctggaggtctatctgca ggaatctccatgttcaaggtgactacagatcctgtccagttatggtctgctaaagacagcagagctaggctggagaaaca caaatttgattcaaagtttgggccattttacagaacggagcagttgataattacccggccatataataagactcttgtga agcataacaaccctcccccatcagtagattatgtcaactacacatcattattcgataagacattcttacatatggtacta gatctacagttagcagttgagggcttaacagcagagtacaacggggagaatgtcacactgaaggacatttgttttaagcc cctggagcccgataacgacaactgtaccatacaaagtatcctccaatactggcaaaacgaccaccataatattgacaagg tcaagatggatcagtttggtttctacgtgctagctgattacctggaccacttccactactgtgtcaatgccccagcctcc acttcagacactacaggtttaaacatgtcttgtttggccaccagcagtcagcctatcttcccctggatatctatgggagg atttcaaggtaaggagtaccaggaatctacagctctagtgatatcaataattgtcgagaatcaccttgatgaagaaaaga atgccaaggcagaggcctgggaaaaagtgtttgtggaatttatgaagaatttcagcagccctaatatgacagtgtcattc tcttctgagagatccatagaggatgagataaatcgtgagagtgattcagacgtaaggactatcgtgataagctacctaat catgtttctgtatatctctataatgcttggaagcttcagggacctgtttgatatatccttagtgtttgttgattctaaga tagtgttgggcctggctggtgtgattatagttctactgtcggtctcagcatccctgggggtctacagctatatgggtgtg gcagccaccctcatcattatagaagtcgtacctttcctcgtactggcagtgggcgtcgacaatatcttcatcttagtaca gacataccagagagagaagcctttaccaaatgagacagtagaggagaaagttggccgtattgttggtaaagtgggcccca gtatgttactgtctagctcctcggagtctatcgccttcttcctaggtgcccttaccagtatgccagcagtaagagttttc tccctttatgctggattagccgtccttattgacttcctgttacagattaccgtatttgttgcccttatgactattgatgc taaaagacaaaaggatgacagatttgacatgtgttgttgtataagaaatgatcatagtaaaccagagcaggtagaaggta ttctgtatacattgttcaaggattattactcacactttctcctcaaggactggataagacccattgtgatgttggtgttt gtcttttggttctgtctcagtggagccttggtccataaaatagagattggattagatcagaaactatccatgcctgatga ttcctatgtactggactactttaaacacctgagcgagtacctacacgtaggggcacctgtttattttgtggctgatgatg ggattgactttaccacacctgagggacagaatatggtgtgtggaggtaatggctgtccacaggactctctacagggccag gtctacttagcttcattacagcctaattatacaaaaatagcccagccatcatcgtcatggttggatgatttctttgattg gttagctcctggtggtcacccaccttgctgtcgaatatttgagtcgaatcattccttctgtcccgctaccgtcccagtgg acactaacgatacagaggacaagtgtgcaccctgtccaataatgacatccaaatcacagggcagacccactccacacgac ttcatcaaatacctaccatggtacttatctgacaatccaggcaccaagtgtgctaaaggaggacatgctgcatatggatc tgctgttaatttactcaataacaaaaccaaagttggagcatcttactttatgacataccacactatcctgaagaccaatg ccgactatatcggggctttgcgagaagctaggaaaatagctgataatatcacacatactatacagtcaaagataaacacc aattctactgttttcccttacagtgtgttttatgtttattacgagcagtacctgactatagtccacgattctatcgttaa catcagtatctgtgtagctgcagtctttgtcgttactttccttctgttaggatgtgatttcttctccgcgctgatgatag ttctagtagtgtttatgattatcgtggacattctaggattcatgtatctatggaatatttcccttaatgctgtctccctt gtaaacttggtgatggccataggtatatcagtggagttctgtgcccacattgtacgagcgttcgctgttagcttactacc cacaaaagttgaacgtgctaaagacgccttgtcaacgatgggaagctctgtactaagtggtattactctgactaagcttg gaggaatcgtagttttagccttttcaaaatcccagcttttccaagtattttactttaggatgtatttagccatggtactt tttggagctactcatggccttattttcttgccagtattgctaagttatatagggccacctttaaacaaagcaagattata tttatatcaaaaagttaagagaacgcacggtgatacagacactgacattttagtggataatgatgctaataatccaccta catatcagaatgtttctgacgctaacaacgatgatttacccaggtatcacgacttaaggacataa |
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Protein
| Protein ID | pfu_aug2.0_10.1_00002.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00002.t1 MTEWKMTSVLISLLFVIMCHHVQVQAEDGQCIWYGECGTSPTGKLNCLYEGPAKKLTDPTGLHLLQTYCPDLYKGDDNTY TCCDTHQLITIEGNMGLPQQFFTRCPSCYNNFLNLYCYMTCGRNQSNYVTLNTTAPPVINSVNYYVTHQYAYGMYNSCKD VQMPSANTKAISVFCGTTAEKCSPPVWLTYMGQTANGHAPFDIYFHIGYEKNITVNGSVVLPMDYQTTPCDKSYANKSAC SCQDCESSCIPVPPPPPPKQPCTVLKIDCWYFSMFIIYLAFALFFLMYVICYSIIKQNSLGVTENSRYEEISSEDENCCE SVYSVNGSGRPIKGKKRRAGAVPVNSLPDLTHADLGCLEKLGAHLEKVLQNFFTKWGTFCARHPAVIIFFGLAVAGGLSA GISMFKVTTDPVQLWSAKDSRARLEKHKFDSKFGPFYRTEQLIITRPYNKTLVKHNNPPPSVDYVNYTSLFDKTFLHMVL DLQLAVEGLTAEYNGENVTLKDICFKPLEPDNDNCTIQSILQYWQNDHHNIDKVKMDQFGFYVLADYLDHFHYCVNAPAS TSDTTGLNMSCLATSSQPIFPWISMGGFQGKEYQESTALVISIIVENHLDEEKNAKAEAWEKVFVEFMKNFSSPNMTVSF SSERSIEDEINRESDSDVRTIVISYLIMFLYISIMLGSFRDLFDISLVFVDSKIVLGLAGVIIVLLSVSASLGVYSYMGV AATLIIIEVVPFLVLAVGVDNIFILVQTYQREKPLPNETVEEKVGRIVGKVGPSMLLSSSSESIAFFLGALTSMPAVRVF SLYAGLAVLIDFLLQITVFVALMTIDAKRQKDDRFDMCCCIRNDHSKPEQVEGILYTLFKDYYSHFLLKDWIRPIVMLVF VFWFCLSGALVHKIEIGLDQKLSMPDDSYVLDYFKHLSEYLHVGAPVYFVADDGIDFTTPEGQNMVCGGNGCPQDSLQGQ VYLASLQPNYTKIAQPSSSWLDDFFDWLAPGGHPPCCRIFESNHSFCPATVPVDTNDTEDKCAPCPIMTSKSQGRPTPHD FIKYLPWYLSDNPGTKCAKGGHAAYGSAVNLLNNKTKVGASYFMTYHTILKTNADYIGALREARKIADNITHTIQSKINT NSTVFPYSVFYVYYEQYLTIVHDSIVNISICVAAVFVVTFLLLGCDFFSALMIVLVVFMIIVDILGFMYLWNISLNAVSL VNLVMAIGISVEFCAHIVRAFAVSLLPTKVERAKDALSTMGSSVLSGITLTKLGGIVVLAFSKSQLFQVFYFRMYLAMVL FGATHGLIFLPVLLSYIGPPLNKARLYLYQKVKRTHGDTDTDILVDNDANNPPTYQNVSDANNDDLPRYHDLRT |
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