Gene
| Gene Model ID | pfu_aug2.0_10.1_00022 |
|---|---|
| Locus | scaffold10.1 : 415204 ... 434206 : + |
| To GenomeBrowser | scaffold10.1:415204..434206 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug1.0_4638.1_44993 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10.1_00022.t1 | 2 | 1 | Porphobil_deam | 1 | 203 | 0.0 | 232.1 | 0.0 | 0.0 | 231.7 |
| pfu_aug2.0_10.1_00022.t1 | 2 | 1 | Porphobil_deamC | 184 | 207 | 6.2e-11 | 42.2 | 1.8 | 8800.0 | -3.1 |
| pfu_aug2.0_10.1_00022.t1 | 2 | 2 | Porphobil_deam | 213 | 271 | 0.0 | 232.1 | 0.09 | 440.0 | -0.4 |
| pfu_aug2.0_10.1_00022.t1 | 2 | 2 | Porphobil_deamC | 213 | 272 | 6.2e-11 | 42.2 | 4.5e-14 | 2.2e-10 | 40.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10.1_00022.t1 | gi|676473556|ref|XP_009059857.1| | hypothetical protein LOTGIDRAFT_218866 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_10.1_00022.t1 | gi|585706448|ref|XP_006823815.1| | PREDICTED: porphobilinogen deaminase-like, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_10.1_00022.t1 | gi|344293036|ref|XP_003418230.1| | PREDICTED: porphobilinogen deaminase [Loxodonta africana] | 0.0 |
| pfu_aug2.0_10.1_00022.t1 | gi|585677419|ref|XP_006890909.1| | PREDICTED: porphobilinogen deaminase isoform X1 [Elephantulus edwardii] | 0.0 |
| pfu_aug2.0_10.1_00022.t1 | gi|634835904|ref|XP_007934634.1| | PREDICTED: porphobilinogen deaminase isoform X1 [Orycteropus afer afer] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10.1_00022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00022.t1 atggttcagaccgacatcatccttaatgccctgcagagaaaatgtccagacgttgaatatgaaataattaccatgaacaa aatcatcgacaaattacaagaagttcccgtaaaggttggtgaaacgacagttttcatcaaaaagttggagatagctctcc tacagaatgaagttgatatcgtaattcattccctgaaggaccttcctgccaaattacccgatggtcttgttgtggcatgc gtatacgagcgggatagtccttacgatgccgtagccatgaatcgagagaacaaagacctcatgttgaaggacttgccagc aggaagtgttattggaaccagttccctaagaagagttgcacagatttcgagaaaatatccacatctaaaatttgaaaata ttcgaggaaacctaaacactcgctttgagaaacttgatggagatggcatctacgccgccataatacttgcagaatcagga ctgcttaggatgaacatgcaaaaccggataacagagaggctggcaggggacatctgtatgcacgcagtatgtcagggtgc cttagcagttgaatgccgtgaggatgacgaaaatatgataaaattgttgtcagtcattcatgacagaaataccacacttc aatgcatcgcagagcgatctttcatcaagcaattggattgtggatataaagtaccagtctcagttttaactactgtcaca gatgagaagattacactgcacggagaagtatcaagtaccgatggtaaaaattttataaaaaaatccatcacaaaatcgtt tgttgaggacgaaaccagcgaactaaaccctcaaaaactgagctataacgatccaaggaaggagtatcttggtatttcgc caccaccacaagtttcacataaatcactactggctgcggaaaacgcaggaatacagcttgcttcaaacattatcaatgac atagatggggacgaaatattgagaacagcaaagaatgagacagaagcgtatgtacgaagcgaaaaactgaaaaaatatca actgtcaacgaagagtccttga |
|
Protein
| Protein ID | pfu_aug2.0_10.1_00022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00022.t1 MVQTDIILNALQRKCPDVEYEIITMNKIIDKLQEVPVKVGETTVFIKKLEIALLQNEVDIVIHSLKDLPAKLPDGLVVAC VYERDSPYDAVAMNRENKDLMLKDLPAGSVIGTSSLRRVAQISRKYPHLKFENIRGNLNTRFEKLDGDGIYAAIILAESG LLRMNMQNRITERLAGDICMHAVCQGALAVECREDDENMIKLLSVIHDRNTTLQCIAERSFIKQLDCGYKVPVSVLTTVT DEKITLHGEVSSTDGKNFIKKSITKSFVEDETSELNPQKLSYNDPRKEYLGISPPPQVSHKSLLAAENAGIQLASNIIND IDGDEILRTAKNETEAYVRSEKLKKYQLSTKSP |
|