Gene
| Gene Model ID | pfu_aug2.0_10.1_00023 |
|---|---|
| Locus | scaffold10.1 : 463664 ... 474222 : + |
| To GenomeBrowser | scaffold10.1:463664..474222 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug1.0_7813.1_31464 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10.1_00023.t1 | 1 | 1 | Porphobil_deam | 7 | 221 | 0.0 | 283.6 | 0.0 | 0.0 | 283.0 |
| pfu_aug2.0_10.1_00023.t1 | 2 | 1 | Porphobil_deamC | 202 | 225 | 8.6e-08 | 32.1 | 3.0 | 11000.0 | -3.5 |
| pfu_aug2.0_10.1_00023.t1 | 2 | 2 | Porphobil_deamC | 230 | 268 | 8.6e-08 | 32.1 | 1.0e-10 | 3.7e-07 | 30.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10.1_00023.t1 | gi|471408224|ref|XP_004385695.1| | PREDICTED: porphobilinogen deaminase isoform X3 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_10.1_00023.t1 | gi|471408220|ref|XP_004385693.1| | PREDICTED: porphobilinogen deaminase isoform X1 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_10.1_00023.t1 | gi|426244662|ref|XP_004016140.1| | PREDICTED: porphobilinogen deaminase isoform X1 [Ovis aries] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10.1_00023.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00023.t1 atggaaagtaacaaggtggttagagtgggtactagaaaaagtcaattggcgatggttcagacaaatacaataatcagagc aataaaggaacaccatccaaatgtcgaatttcaaatcgtttccatggacacaattggtgataaagtaatggaccgggcaa ttacaaagataggagagacaagtgtatttacaagggagctggaagttgctttactggagaaggaggtggatatggtggtg cactccttcaaagatctgcctgctaaactccccgatggtctggtggttggatgtgtttatactcgagacagcccatatga cgtcatcgccatgcattctaaataccagggaaaaacattacaggacttgccgccaaacagtgtaattggaacaagttctc tcagaagaatggctcagattgcgcggaaatacccccatttaaagtttgaaaacattagaggcaatttgaacactcgattc cagaagttagatgagggtgataaatactcagcccttatacttgctgaagcaggactcgttcgaatgggatgggagaacag aatctcagagaaactacattcagacgtgtgtatgtacgcagtatgtcagggtgctatcggagttgagtgcttggagggag actcgaacactctgcgtcttctctcgtgtatccatgatccaaagtccgcactggaatgtatagccgaaaggtccttcttc aaacagctggatgtcggctacaaagttccagtatctgtacatacagaagtaacaaaagataagatacaactatctggtgg attcgacgaaagtttgactcgaagggaatatttgggaatttctccccctccaggtgttacccagaatgcgttgtcaatcg cagagaatgttgggatagaactggccgccatcatcgtgaatgacgaaaagggcgaggaacttctcagtatagcaaaatct caaactgaagccgtcagccaggcagcaaaacagaggaaagccataagaggaaatatcattgctgttcagtga |
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Protein
| Protein ID | pfu_aug2.0_10.1_00023.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00023.t1 MESNKVVRVGTRKSQLAMVQTNTIIRAIKEHHPNVEFQIVSMDTIGDKVMDRAITKIGETSVFTRELEVALLEKEVDMVV HSFKDLPAKLPDGLVVGCVYTRDSPYDVIAMHSKYQGKTLQDLPPNSVIGTSSLRRMAQIARKYPHLKFENIRGNLNTRF QKLDEGDKYSALILAEAGLVRMGWENRISEKLHSDVCMYAVCQGAIGVECLEGDSNTLRLLSCIHDPKSALECIAERSFF KQLDVGYKVPVSVHTEVTKDKIQLSGGFDESLTRREYLGISPPPGVTQNALSIAENVGIELAAIIVNDEKGEELLSIAKS QTEAVSQAAKQRKAIRGNIIAVQ |
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