Gene
| Gene Model ID | pfu_aug2.0_10.1_00029 |
|---|---|
| Locus | scaffold10.1 : 587819 ... 589438 : + |
| To GenomeBrowser | scaffold10.1:587819..589438 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug1.0_2295.1_01050 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-7-like precursor | GO:0005216 GO:0006811 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10.1_00029.t1 | 1 | 1 | Neur_chan_LBD | 30 | 238 | 0.0 | 187.6 | 0.0 | 0.0 | 186.8 |
| pfu_aug2.0_10.1_00029.t1 | 1 | 1 | Neur_chan_memb | 246 | 411 | 6.6e-22 | 78.5 | 9.0e-24 | 4.5e-20 | 72.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10.1_00029.t1 | gi|676477681|ref|XP_009061183.1| | hypothetical protein LOTGIDRAFT_219547 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_10.1_00029.t1 | gi|526117479|ref|NP_001267779.1| | neuronal acetylcholine receptor subunit alpha-7-like precursor [Aplysia californica] | 0.0 |
| pfu_aug2.0_10.1_00029.t1 | gi|676490876|ref|XP_009065412.1| | hypothetical protein LOTGIDRAFT_196834 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_10.1_00029.t1 | gi|323276597|ref|NP_001190978.1| | nicotinic acetylcholine receptor subunit precursor [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_10.1_00029.t1 | gi|676493326|ref|XP_009066204.1| | hypothetical protein LOTGIDRAFT_64373, partial [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10.1_00029.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00029.t1 atgaagtggcagatacttctgtgtttttgctttatacttataaaagtccagggacaagatactggcgatttcgaatatga ggatgctaaagctctctacgattacctgacggaaaataaaaccaatgcgaacattgtaccgatatgtaagcggaatcaaa aagtgttggttacggtagaactggccgtgagagaacttgtggaattagacgaaaagaaacaaatcctttgcgcaaaagtt tggttgagactcgcatggaatgactgttctctgaagtggaacccagcagatttcggtaatttgacaaaaatcgtgatgcc gtatgaaaacgtttggcaaccggacataacactgtatgaaggagcgtcagaggaggcgaatatgcccgataaaaccgaat ataaagcgtgggtgcacagcaacggtcgtgtgacatataacttcccgtcagtcacgacgacaacttgccgaatcgacgtg acttatttccccttcgattatcagaattgtagcttgaaattcggttcttggaatttcgacggaaatcaaatagactttcg cctccagaattctgaagcggacactagtgcattcgtgatacataacgaatgggagttagtcagtgctcatggaatccgac acgaaagttattacgagttaagtcccgaaccttacccggatataacgtattacatagtgctagcaaggcgaccaaagttc tactttgtgacactattctttccatcgatcgttattttgggtctttcgttgctcggcttcatgctcccgccggagtcagg ggagaaaatcaacatccagatcacggtgctgctgtctatctcggtgttcttactcctcgtacaagacaaactaccgtgct cctctcagactttcccgcaaattgggatttacttctctatagccatgctgctcacgtgcttatcctgcgttatgacgtca atcgttatgtatattcacctcaaacaagagaccacggccaaaccacccccaagatggctccgaaaatccgtagaggtcat gacattaaatatatcatgcaaaagacgacgaaagccacgcaataccgatgacgtcaaagtgaaaagcatccgggttctag agggcgacgtcgattcgttcacaaacatcggatttgtatcggaggaaaatggtgacgtgaaacataatggccaagttgcc gatgttgacttgccagaatacaaggaaagagaatcgtccacgagcagttatagcctaagtcacgaggaggagaaagagtg ggagttactgtccttggctatagatagactattcatgcttttgtactttattttcatggtactgaatatctgcgtgtatt tattctggaactggtccgaacttggacgcttttggcaataa |
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Protein
| Protein ID | pfu_aug2.0_10.1_00029.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00029.t1 MKWQILLCFCFILIKVQGQDTGDFEYEDAKALYDYLTENKTNANIVPICKRNQKVLVTVELAVRELVELDEKKQILCAKV WLRLAWNDCSLKWNPADFGNLTKIVMPYENVWQPDITLYEGASEEANMPDKTEYKAWVHSNGRVTYNFPSVTTTTCRIDV TYFPFDYQNCSLKFGSWNFDGNQIDFRLQNSEADTSAFVIHNEWELVSAHGIRHESYYELSPEPYPDITYYIVLARRPKF YFVTLFFPSIVILGLSLLGFMLPPESGEKINIQITVLLSISVFLLLVQDKLPCSSQTFPQIGIYFSIAMLLTCLSCVMTS IVMYIHLKQETTAKPPPRWLRKSVEVMTLNISCKRRRKPRNTDDVKVKSIRVLEGDVDSFTNIGFVSEENGDVKHNGQVA DVDLPEYKERESSTSSYSLSHEEEKEWELLSLAIDRLFMLLYFIFMVLNICVYLFWNWSELGRFWQ |
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