Gene
| Gene Model ID | pfu_aug2.0_10.1_00037 |
|---|---|
| Locus | scaffold10.1 : 755366 ... 759579 : + |
| To GenomeBrowser | scaffold10.1:755366..759579 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug1.0_4826.1_59611 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: tuberin | GO:0006810 GO:0044444 GO:0048523 GO:1902531 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10.1_00037.t1 | 2 | 1 | Tuberin | 9 | 44 | 1.4e-10 | 40.7 | 0.031 | 460.0 | -0.4 |
| pfu_aug2.0_10.1_00037.t1 | 2 | 2 | Tuberin | 82 | 142 | 1.4e-10 | 40.7 | 2.5e-14 | 3.7e-10 | 39.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10.1_00037.t1 | gi|665806777|ref|XP_008551643.1| | PREDICTED: tuberin [Microplitis demolitor] | 1.0e-19 |
| pfu_aug2.0_10.1_00037.t1 | gi|556968328|ref|XP_005993168.1| | PREDICTED: LOW QUALITY PROTEIN: tuberin [Latimeria chalumnae] | 4.0e-19 |
| pfu_aug2.0_10.1_00037.t1 | gi|472367364|ref|XP_004403215.1| | PREDICTED: tuberin isoform X1 [Odobenus rosmarus divergens] | 6.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_10.1_00037.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00037.t1 atgcatgaggatgatttgataaaccatgtggtgcttcctcatctaagtcacatagagactgaccacgatccggtggtcag aaaagtagccgctgaaatgttactgaccctagcccacaactgtagtgaccaatgttttatggatatcatagggttactag agaagataataaacaagccaatgatagctaggctgacctcgccgtatccagctgtagaagggtcagaggtcatgcaacag ctggatgaaaaccatttgatagatattaaaatagccctatgtgggctggtagaacttttcagggagaagttatttttatg tccgtctagtcattgtctgaagctttatgacatcttggtgacacacatgaaaacccagtattctgatcccagacagtatt atagtcactctgcggcatacatccgtaaacagaacaatttttaa |
|
Protein
| Protein ID | pfu_aug2.0_10.1_00037.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10.1_00037.t1 MHEDDLINHVVLPHLSHIETDHDPVVRKVAAEMLLTLAHNCSDQCFMDIIGLLEKIINKPMIARLTSPYPAVEGSEVMQQ LDENHLIDIKIALCGLVELFREKLFLCPSSHCLKLYDILVTHMKTQYSDPRQYYSHSAAYIRKQNNF |
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