Gene
| Gene Model ID | pfu_aug2.0_100.1_00230 |
|---|---|
| Locus | scaffold100.1 : 66793 ... 74583 : + |
| To GenomeBrowser | scaffold100.1:66793..74583 |
| Genes list of scaffold | scaffold100.1 |
| Synonym | pfu_aug1.0_14996.1_54131 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_100.1_00230.t1 | 4 | 1 | zf-H2C2_2 | 46 | 57 | 8.5e-17 | 60.5 | 0.038 | 94.0 | 3.5 |
| pfu_aug2.0_100.1_00230.t1 | 3 | 1 | zf-C2H2 | 49 | 71 | 9.5e-07 | 28.8 | 0.00026 | 0.64 | 10.4 |
| pfu_aug2.0_100.1_00230.t1 | 4 | 2 | zf-H2C2_2 | 64 | 71 | 8.5e-17 | 60.5 | 0.26 | 640.0 | 0.9 |
| pfu_aug2.0_100.1_00230.t1 | 3 | 2 | zf-C2H2 | 123 | 132 | 9.5e-07 | 28.8 | 0.039 | 96.0 | 3.6 |
| pfu_aug2.0_100.1_00230.t1 | 4 | 3 | zf-H2C2_2 | 125 | 148 | 8.5e-17 | 60.5 | 2.4e-12 | 6.0e-09 | 35.7 |
| pfu_aug2.0_100.1_00230.t1 | 3 | 3 | zf-C2H2 | 138 | 160 | 9.5e-07 | 28.8 | 5.6e-08 | 0.00014 | 21.9 |
| pfu_aug2.0_100.1_00230.t1 | 4 | 4 | zf-H2C2_2 | 153 | 169 | 8.5e-17 | 60.5 | 4.7e-09 | 1.2e-05 | 25.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_100.1_00230.t1 | gi|260835926|ref|XP_002612958.1| | hypothetical protein BRAFLDRAFT_114219 [Branchiostoma floridae] | 2.0e-22 |
| pfu_aug2.0_100.1_00230.t1 | gi|260813390|ref|XP_002601401.1| | hypothetical protein BRAFLDRAFT_103418 [Branchiostoma floridae] | 2.0e-21 |
| pfu_aug2.0_100.1_00230.t1 | gi|260815951|ref|XP_002602736.1| | hypothetical protein BRAFLDRAFT_72903 [Branchiostoma floridae] | 4.0e-21 |
| pfu_aug2.0_100.1_00230.t1 | gi|260823072|ref|XP_002604007.1| | hypothetical protein BRAFLDRAFT_57768 [Branchiostoma floridae] | 8.0e-21 |
| pfu_aug2.0_100.1_00230.t1 | gi|260787831|ref|XP_002588955.1| | hypothetical protein BRAFLDRAFT_89146 [Branchiostoma floridae] | 2.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_100.1_00230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00230.t1 atggcccgattagccgttgttagcgtgctcgcttctctaaggtaccgggttcgaatcccagattcggcaagtgggaggat tcatgaattgatagaaccattacaacagaaattatctccaaaggcagagacaacagaagaagcttacagatgtgacatat gcttgttttcatctactcagcagatttctgtcagaaaacacctgataacacactgtgagattgaaagtttcattggtaat ccaattgaaaaccataaataccctttaaacattctcaaacaagttaaccaagaacattatgctaaaggtaatatagagga taaactgtataattatgatatgagtttttatagtactgctgtactaatgaaactcaatgcacatcagaggacacacacag gagagaagccttataggtgtgatgagtgtgggtatagaactactcagctgagtggtctcaagacacatcagaggacacac acaggagagaagccttataagtgtgatgagtgatctgctgagaatctgcatggcaagagtgcatatctgtttctgaaaca gcagacaacagagcaatgtttgagtagcagagatccaacacttcactag |
|
Protein
| Protein ID | pfu_aug2.0_100.1_00230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00230.t1 MARLAVVSVLASLRYRVRIPDSASGRIHELIEPLQQKLSPKAETTEEAYRCDICLFSSTQQISVRKHLITHCEIESFIGN PIENHKYPLNILKQVNQEHYAKGNIEDKLYNYDMSFYSTAVLMKLNAHQRTHTGEKPYRCDECGYRTTQLSGLKTHQRTH TGEKPYKCDEXSAENLHGKSAYLFLKQQTTEQCLSSRDPTLH |
|