Gene
| Gene Model ID | pfu_aug2.0_100.1_00232 |
|---|---|
| Locus | scaffold100.1 : 98706 ... 136255 : - |
| To GenomeBrowser | scaffold100.1:98706..136255 |
| Genes list of scaffold | scaffold100.1 |
| Synonym | pfu_aug1.0_24607.1_19016 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_100.1_00232.t2 | 2 | 1 | AAA_23 | 25 | 254 | 1.9e-23 | 83.8 | 2.0e-26 | 1.9e-23 | 83.8 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 1 | AAA_13 | 39 | 90 | 8.0e-10 | 37.8 | 1.7e-06 | 0.0016 | 17.0 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 1 | AAA_21 | 50 | 72 | 4.3e-08 | 33.4 | 6.9e-07 | 0.00064 | 19.7 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 2 | AAA_13 | 192 | 394 | 8.0e-10 | 37.8 | 3.9e-05 | 0.036 | 12.5 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 1 | Rad50_zn_hook | 298 | 324 | 3.6e-09 | 35.9 | 1.3 | 1200.0 | -1.0 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 2 | AAA_21 | 331 | 393 | 4.3e-08 | 33.4 | 8.9 | 8200.0 | -3.6 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 2 | Rad50_zn_hook | 351 | 361 | 3.6e-09 | 35.9 | 3.4 | 3200.0 | -2.4 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 3 | Rad50_zn_hook | 407 | 427 | 3.6e-09 | 35.9 | 0.15 | 140.0 | 2.0 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 3 | AAA_13 | 412 | 580 | 8.0e-10 | 37.8 | 0.068 | 63.0 | 1.8 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 3 | AAA_21 | 417 | 460 | 4.3e-08 | 33.4 | 4.8 | 4500.0 | -2.7 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 4 | Rad50_zn_hook | 443 | 455 | 3.6e-09 | 35.9 | 7.1 | 6600.0 | -3.4 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 5 | Rad50_zn_hook | 466 | 484 | 3.6e-09 | 35.9 | 3.0 | 2800.0 | -2.2 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 6 | Rad50_zn_hook | 528 | 544 | 3.6e-09 | 35.9 | 6.2 | 5700.0 | -3.2 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 4 | AAA_13 | 557 | 948 | 8.0e-10 | 37.8 | 5.9e-05 | 0.054 | 11.9 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 7 | Rad50_zn_hook | 611 | 627 | 3.6e-09 | 35.9 | 6.0 | 5600.0 | -3.1 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 8 | Rad50_zn_hook | 696 | 740 | 3.6e-09 | 35.9 | 3.9e-12 | 3.6e-09 | 35.9 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 9 | Rad50_zn_hook | 784 | 796 | 3.6e-09 | 35.9 | 2.8 | 2600.0 | -2.1 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 4 | AAA_21 | 786 | 917 | 4.3e-08 | 33.4 | 2.1 | 2000.0 | -1.6 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 10 | Rad50_zn_hook | 825 | 837 | 3.6e-09 | 35.9 | 5.7 | 5300.0 | -3.1 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 5 | AAA_13 | 982 | 1266 | 8.0e-10 | 37.8 | 0.011 | 9.9 | 4.4 |
| pfu_aug2.0_100.1_00232.t2 | 5 | 5 | AAA_21 | 997 | 1260 | 4.3e-08 | 33.4 | 2.5e-07 | 0.00023 | 21.2 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 11 | Rad50_zn_hook | 1018 | 1031 | 3.6e-09 | 35.9 | 5.1 | 4800.0 | -2.9 |
| pfu_aug2.0_100.1_00232.t2 | 12 | 12 | Rad50_zn_hook | 1089 | 1101 | 3.6e-09 | 35.9 | 7.5 | 6900.0 | -3.4 |
| pfu_aug2.0_100.1_00232.t2 | 1 | 1 | SbcCD_C | 1161 | 1235 | 1.2e-11 | 44.3 | 4.7e-14 | 4.4e-11 | 42.5 |
| pfu_aug2.0_100.1_00232.t2 | 2 | 2 | AAA_23 | 1236 | 1250 | 1.9e-23 | 83.8 | 5.1 | 4800.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_100.1_00232.t2 | gi|731250367|ref|XP_010638069.1| | PREDICTED: DNA repair protein RAD50 isoform X2 [Fukomys damarensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_100.1_00232.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00232.t1 atgtcagtccaggggatccgaagtttcggaccggaggacaaggacaaacaagttatgagctttttcacaccccttacact tatacttggtcctaacggaacagggaaaactactataatagaatgtttaaagtacatgaccacagggatcatgccccctg gtactaaaggtggagccttcatacatgatccaaaggtagcccatgagagagaggtcaagggtcaaattaaactccagttt cgtgatgttacgaaaaacaagatggtgatccaaaggttgatgttggtgacacagaaagcaaaaaaagtggagatgaaaac attggacggccttatcacgagaatcggacaggatggtgagaagcggagtatcagttctaaatgtgcagagatggatcgtg agatgattacatccctcggtgtcgctaaacctgttttagaaaacgtcatattctgccatcaggaagattccaattggcca ctgagtgaagggaaggctctcaaggataaattcgatgctatttttgcatcgacacgttacgttaaagccctggacacgat aaggaagctgaaacaaactcaggaccaagagctgaagatgttcaaacaggacattacgtatctcagacagcataaagaca aggccagtcagcttgaagcagacctgaatgaagtacaggccaagctagcagcgtccaaggaatctgtggaaaaagtggat gttaaattacaaccagtagaggaaaaattggaccaaatcggaactaagtcagcagagatatacaagatacagacaaatat aaccaagcatcaaagtgaaaggaaactgatggaaaagacagctgaggagcttcggtcacagatagaaaatgaattctcag gatctacagaagaattaaaaagaactttagcagaatttgaagataaagttgaggagagacaagaaaccattgagcagttc caaagaaaacaggctgagctacagagagagatagaaaggttgtcacaagaaaaaagtaaattattgatggaggtgggaaa gcttgaaaaggaggcggagcatcatgaagagaatatcagaaagagagattctcagttaaggaaagtggcaacaaaatacg actttgaaggtttcagcagaggagaaatcacagatgaaaagtacaagagttttctagagcatgtcagatcaaaactagaa accatggtagaagaggggaaaagtattaaagcagaatttgaagtgaaagaaaaggaaatacaacagaagatagatgatgt gagagacaaaaagacaaaactggagcaagctgaaaaaatgaagaaagacatgatggcagataacacaagtaagatcaggg atattaaccgtaagctgagtgaggtggacgcatcggcaggaaggttagaacaaatctctagggaactgaaaagagctgaa catagcctaacaactacagagggagctgttaatgtggacagcttaaagaaggacatcacgtcacttaataaagaaaagac aactctagattcaaggataagtgagcttagctccgagatgaatcgtttacatctccagtccagtgcccaggctcatctag atatgctaaaaaaggacaaggcatccaaggaagaaaatgtcagaagattgaaaaacaaacaggaggacacggtaacgtat ctgataggtcacatgccagccagaaacatgagaggagaactagaggaatatatcgggaaccaaagtaacagtgtcaaaag gctttctcaagaactacagtcagccaagtctgaattgtctaccaaggaagctgagaagaaaatggtgtcggaaacactga aaaagaaggaggatgatcttaaagagttggaggaaaagatatttggtgtgtgtggaagtcagaactttgatgaaggactc tcaacacttcaagagaaaatgtcacaggcacaggagattttatcattctgtgtcagcgagggtctttgctgggagctgag catttcttcaaaaaaatatgttgaggatttagaaaaacaggacccgtgctgccctctgtgtcaccgagagtttgatacta atcaagaagttagagagctcgtctctgagctaaggaacaagttgagaatggtgcccaataaactactaaaagctgagaaa gacttggatgaatataaagtcaagtacgattcaatgatgcagttaaagccactgaaggaaaatattgttactttggatga aagagaaattccagaactgaaggggcgactcaagaaaatcaatgaaaccatacagaaacttagagatgacattcaagata aagatgaagacttacaaacaaaggaacaagatgctgacatggctaagcagatcctgcctgacattgttatgatggataga taccaaggggaggtcaacgaactagagaagaaaatagccggagaagctgccaagttaataggtggagatagtaacaggac attacaagatgtcatcaatgagaaagaagacatgcaaatgaaactagacacggtgaacaaacaactggatcataaacgac agaaaatccacgatcattctgaggaggttcagcgtttaaaaggaaagataaatggccttagagaagagaagcttaaaatc gacagtgatctacagcaacgtaacaaattagaagacgacaaagcgaatttactcagtgaaaacgaaattcatgagagaga gattaaggatgctagagaacagcttaagccattacagacccatatagataagctgaggggagagaaggatgacatcatca gaaagaaagaagagaaggtagagggtgtcaaagtagaggtagatttgtttaggaatgaagtgaataagaaggaatatgct gaaaatctggacaaattacgcagtgatctggctaaaaataaggaaagagaaagagaattaatggataatttgagattgag gaaacaggaggaggatattaaaaagctagggaggcaaatagaagagctggaggaacagctaggaggaattgatgtcaaaa atcttgatcgtgaaaggaagaaattaatgatggaacaagaggaacttaagaaagagaaacaatatgcggagggtcgacaa cgaggtttactggaacagattaccggcataaagagagagttacagtctgatatgtacagagaagcagctcaaaaatacaa agaaaaaattatcatgctcaagactacagaactggcatccagtgaccttgagaaatattacaaagcattagataaagcaa tcatgaattatcacaatgtaaagatggatgaaattaacaaaattgtccgagaactttggaggaacacttacagaggaaat gacatcgacaccatagagatacgctcagaagatgatgatgccggtctgaccaaaaccagaaggacttataactaccgagt ggtgatgataaaaggtgatacggcattggatatgaggggaagatgcagtgctgggcagaaggtcttggcctccctgatta taagaatggctctggcagagactttctgtctgaattgtggaatcctggctcttgacgaaccaactaccaaccttgacaga gaaaatatcgaaagtctggcatatgcacttgtagacataattaaatcccgatccaatcagaagaatttccagctaatcgt tattacccacgacgaggattttgtggaactgctcgggcgatctgactatgtagaggaattcttcaaagtccgtaaggata ctaatggcaattctagattggttagagccagagtagaagatcttcacagtcgttga |
|
| Transcript ID | pfu_aug2.0_100.1_00232.t2 |
| Definition | - |
>pfu_aug2.0_100.1_00232.t2 atgttggtattgcgatgttctgctgctagggaccctgaagtgaaaaaaccgtccaggatgtcttgcctagagaagatgtc agtccaggggatccgaagtttcggaccggaggacaaggacaaacaagttatgagctttttcacaccccttacacttatac ttggtcctaacggaacagggaaaactactataatagaatgtttaaagtacatgaccacagggatcatgccccctggtact aaaggtggagccttcatacatgatccaaaggtagcccatgagagagaggtcaagggtcaaattaaactccagtttcgtga tgttacgaaaaacaagatggtgatccaaaggttgatgttggtgacacagaaagcaaaaaaagtggagatgaaaacattgg acggccttatcacgagaatcggacaggatggtgagaagcggagtatcagttctaaatgtgcagagatggatcgtgagatg attacatccctcggtgtcgctaaacctgttttagaaaacgtcatattctgccatcaggaagattccaattggccactgag tgaagggaaggctctcaaggataaattcgatgctatttttgcatcgacacgttacgttaaagccctggacacgataagga agctgaaacaaactcaggaccaagagctgaagatgttcaaacaggacattacgtatctcagacagcataaagacaaggcc agtcagcttgaagcagacctgaatgaagtacaggccaagctagcagcgtccaaggaatctgtggaaaaagtggatgttaa attacaaccagtagaggaaaaattggaccaaatcggaactaagtcagcagagatatacaagatacagacaaatataacca agcatcaaagtgaaaggaaactgatggaaaagacagctgaggagcttcggtcacagatagaaaatgaattctcaggatct acagaagaattaaaaagaactttagcagaatttgaagataaagttgaggagagacaagaaaccattgagcagttccaaag aaaacaggctgagctacagagagagatagaaaggttgtcacaagaaaaaagtaaattattgatggaggtgggaaagcttg aaaaggaggcggagcatcatgaagagaatatcagaaagagagattctcagttaaggaaagtggcaacaaaatacgacttt gaaggtttcagcagaggagaaatcacagatgaaaagtacaagagttttctagagcatgtcagatcaaaactagaaaccat ggtagaagaggggaaaagtattaaagcagaatttgaagtgaaagaaaaggaaatacaacagaagatagatgatgtgagag acaaaaagacaaaactggagcaagctgaaaaaatgaagaaagacatgatggcagataacacaagtaagatcagggatatt aaccgtaagctgagtgaggtggacgcatcggcaggaaggttagaacaaatctctagggaactgaaaagagctgaacatag cctaacaactacagagggagctgttaatgtggacagcttaaagaaggacatcacgtcacttaataaagaaaagacaactc tagattcaaggataagtgagcttagctccgagatgaatcgtttacatctccagtccagtgcccaggctcatctagatatg ctaaaaaaggacaaggcatccaaggaagaaaatgtcagaagattgaaaaacaaacaggaggacacggtaacgtatctgat aggtcacatgccagccagaaacatgagaggagaactagaggaatatatcgggaaccaaagtaacagtgtcaaaaggcttt ctcaagaactacagtcagccaagtctgaattgtctaccaaggaagctgagaagaaaatggtgtcggaaacactgaaaaag aaggaggatgatcttaaagagttggaggaaaagatatttggtgtgtgtggaagtcagaactttgatgaaggactctcaac acttcaagagaaaatgtcacaggcacaggagattttatcattctgtgtcagcgagggtctttgctgggagctgagcattt cttcaaaaaaatatgttgaggatttagaaaaacaggacccgtgctgccctctgtgtcaccgagagtttgatactaatcaa gaagttagagagctcgtctctgagctaaggaacaagttgagaatggtgcccaataaactactaaaagctgagaaagactt ggatgaatataaagtcaagtacgattcaatgatgcagttaaagccactgaaggaaaatattgttactttggatgaaagag aaattccagaactgaaggggcgactcaagaaaatcaatgaaaccatacagaaacttagagatgacattcaagataaagat gaagacttacaaacaaaggaacaagatgctgacatggctaagcagatcctgcctgacattgttatgatggatagatacca aggggaggtcaacgaactagagaagaaaatagccggagaagctgccaagttaataggtggagatagtaacaggacattac aagatgtcatcaatgagaaagaagacatgcaaatgaaactagacacggtgaacaaacaactggatcataaacgacagaaa atccacgatcattctgaggaggttcagcgtttaaaaggaaagataaatggccttagagaagagaagcttaaaatcgacag tgatctacagcaacgtaacaaattagaagacgacaaagcgaatttactcagtgaaaacgaaattcatgagagagagatta aggatgctagagaacagcttaagccattacagacccatatagataagctgaggggagagaaggatgacatcatcagaaag aaagaagagaaggtagagggtgtcaaagtagaggtagatttgtttaggaatgaagtgaataagaaggaatatgctgaaaa tctggacaaattacgcagtgatctggctaaaaataaggaaagagaaagagaattaatggataatttgagattgaggaaac aggaggaggatattaaaaagctagggaggcaaatagaagagctggaggaacagctaggaggaattgatgtcaaaaatctt gatcgtgaaaggaagaaattaatgatggaacaagaggaacttaagaaagagaaacaatatgcggagggtcgacaacgagg tttactggaacagattaccggcataaagagagagttacagtctgatatgtacagagaagcagctcaaaaatacaaagaaa aaattatcatgctcaagactacagaactggcatccagtgaccttgagaaatattacaaagcattagataaagcaatcatg aattatcacaatgtaaagatggatgaaattaacaaaattgtccgagaactttggaggaacacttacagaggaaatgacat cgacaccatagagatacgctcagaagatgatgatgccggtctgaccaaaaccagaaggacttataactaccgagtggtga tgataaaaggtgatacggcattggatatgaggggaagatgcagtgctgggcagaaggtcttggcctccctgattataaga atggctctggcagagactttctgtctgaattgtggaatcctggctcttgacgaaccaactaccaaccttgacagagaaaa tatcgaaagtctggcatatgcacttgtagacataattaaatcccgatccaatcagaagaatttccagctaatcgttatta cccacgacgaggattttgtggaactgctcgggcgatctgactatgtagaggaattcttcaaagtccgtaaggatactaat ggcaattctagattggttagagccagagtagaagatcttcacagtcgttga |
|
Protein
| Protein ID | pfu_aug2.0_100.1_00232.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00232.t1 MSVQGIRSFGPEDKDKQVMSFFTPLTLILGPNGTGKTTIIECLKYMTTGIMPPGTKGGAFIHDPKVAHEREVKGQIKLQF RDVTKNKMVIQRLMLVTQKAKKVEMKTLDGLITRIGQDGEKRSISSKCAEMDREMITSLGVAKPVLENVIFCHQEDSNWP LSEGKALKDKFDAIFASTRYVKALDTIRKLKQTQDQELKMFKQDITYLRQHKDKASQLEADLNEVQAKLAASKESVEKVD VKLQPVEEKLDQIGTKSAEIYKIQTNITKHQSERKLMEKTAEELRSQIENEFSGSTEELKRTLAEFEDKVEERQETIEQF QRKQAELQREIERLSQEKSKLLMEVGKLEKEAEHHEENIRKRDSQLRKVATKYDFEGFSRGEITDEKYKSFLEHVRSKLE TMVEEGKSIKAEFEVKEKEIQQKIDDVRDKKTKLEQAEKMKKDMMADNTSKIRDINRKLSEVDASAGRLEQISRELKRAE HSLTTTEGAVNVDSLKKDITSLNKEKTTLDSRISELSSEMNRLHLQSSAQAHLDMLKKDKASKEENVRRLKNKQEDTVTY LIGHMPARNMRGELEEYIGNQSNSVKRLSQELQSAKSELSTKEAEKKMVSETLKKKEDDLKELEEKIFGVCGSQNFDEGL STLQEKMSQAQEILSFCVSEGLCWELSISSKKYVEDLEKQDPCCPLCHREFDTNQEVRELVSELRNKLRMVPNKLLKAEK DLDEYKVKYDSMMQLKPLKENIVTLDEREIPELKGRLKKINETIQKLRDDIQDKDEDLQTKEQDADMAKQILPDIVMMDR YQGEVNELEKKIAGEAAKLIGGDSNRTLQDVINEKEDMQMKLDTVNKQLDHKRQKIHDHSEEVQRLKGKINGLREEKLKI DSDLQQRNKLEDDKANLLSENEIHEREIKDAREQLKPLQTHIDKLRGEKDDIIRKKEEKVEGVKVEVDLFRNEVNKKEYA ENLDKLRSDLAKNKERERELMDNLRLRKQEEDIKKLGRQIEELEEQLGGIDVKNLDRERKKLMMEQEELKKEKQYAEGRQ RGLLEQITGIKRELQSDMYREAAQKYKEKIIMLKTTELASSDLEKYYKALDKAIMNYHNVKMDEINKIVRELWRNTYRGN DIDTIEIRSEDDDAGLTKTRRTYNYRVVMIKGDTALDMRGRCSAGQKVLASLIIRMALAETFCLNCGILALDEPTTNLDR ENIESLAYALVDIIKSRSNQKNFQLIVITHDEDFVELLGRSDYVEEFFKVRKDTNGNSRLVRARVEDLHSR |
|
| Protein ID | pfu_aug2.0_100.1_00232.t2 |
| Definition | - |
>pfu_aug2.0_100.1_00232.t2 MLVLRCSAARDPEVKKPSRMSCLEKMSVQGIRSFGPEDKDKQVMSFFTPLTLILGPNGTGKTTIIECLKYMTTGIMPPGT KGGAFIHDPKVAHEREVKGQIKLQFRDVTKNKMVIQRLMLVTQKAKKVEMKTLDGLITRIGQDGEKRSISSKCAEMDREM ITSLGVAKPVLENVIFCHQEDSNWPLSEGKALKDKFDAIFASTRYVKALDTIRKLKQTQDQELKMFKQDITYLRQHKDKA SQLEADLNEVQAKLAASKESVEKVDVKLQPVEEKLDQIGTKSAEIYKIQTNITKHQSERKLMEKTAEELRSQIENEFSGS TEELKRTLAEFEDKVEERQETIEQFQRKQAELQREIERLSQEKSKLLMEVGKLEKEAEHHEENIRKRDSQLRKVATKYDF EGFSRGEITDEKYKSFLEHVRSKLETMVEEGKSIKAEFEVKEKEIQQKIDDVRDKKTKLEQAEKMKKDMMADNTSKIRDI NRKLSEVDASAGRLEQISRELKRAEHSLTTTEGAVNVDSLKKDITSLNKEKTTLDSRISELSSEMNRLHLQSSAQAHLDM LKKDKASKEENVRRLKNKQEDTVTYLIGHMPARNMRGELEEYIGNQSNSVKRLSQELQSAKSELSTKEAEKKMVSETLKK KEDDLKELEEKIFGVCGSQNFDEGLSTLQEKMSQAQEILSFCVSEGLCWELSISSKKYVEDLEKQDPCCPLCHREFDTNQ EVRELVSELRNKLRMVPNKLLKAEKDLDEYKVKYDSMMQLKPLKENIVTLDEREIPELKGRLKKINETIQKLRDDIQDKD EDLQTKEQDADMAKQILPDIVMMDRYQGEVNELEKKIAGEAAKLIGGDSNRTLQDVINEKEDMQMKLDTVNKQLDHKRQK IHDHSEEVQRLKGKINGLREEKLKIDSDLQQRNKLEDDKANLLSENEIHEREIKDAREQLKPLQTHIDKLRGEKDDIIRK KEEKVEGVKVEVDLFRNEVNKKEYAENLDKLRSDLAKNKERERELMDNLRLRKQEEDIKKLGRQIEELEEQLGGIDVKNL DRERKKLMMEQEELKKEKQYAEGRQRGLLEQITGIKRELQSDMYREAAQKYKEKIIMLKTTELASSDLEKYYKALDKAIM NYHNVKMDEINKIVRELWRNTYRGNDIDTIEIRSEDDDAGLTKTRRTYNYRVVMIKGDTALDMRGRCSAGQKVLASLIIR MALAETFCLNCGILALDEPTTNLDRENIESLAYALVDIIKSRSNQKNFQLIVITHDEDFVELLGRSDYVEEFFKVRKDTN GNSRLVRARVEDLHSR |
|