Gene
| Gene Model ID | pfu_aug2.0_100.1_00243 |
|---|---|
| Locus | scaffold100.1 : 426189 ... 443315 : + |
| To GenomeBrowser | scaffold100.1:426189..443315 |
| Genes list of scaffold | scaffold100.1 |
| Synonym | pfu_aug1.0_299.1_50771 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| spartin isoform x1 | GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_100.1_00243.t1 | 2 | 1 | MIT | 36 | 112 | 1.3e-20 | 73.0 | 9.2e-13 | 1.5e-09 | 37.5 |
| pfu_aug2.0_100.1_00243.t1 | 2 | 2 | MIT | 312 | 388 | 1.3e-20 | 73.0 | 8.6e-13 | 1.4e-09 | 37.6 |
| pfu_aug2.0_100.1_00243.t1 | 1 | 1 | Senescence | 644 | 832 | 4.60004e-41 | 140.4 | 6.30584e-44 | 9.99995e-41 | 139.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_100.1_00243.t1 | gi|524868741|ref|XP_005091170.1| | PREDICTED: spartin-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_100.1_00243.t1 | gi|260833324|ref|XP_002611607.1| | hypothetical protein BRAFLDRAFT_117149 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_100.1_00243.t1 | gi|390336348|ref|XP_003724330.1| | PREDICTED: spartin [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_100.1_00243.t1 | gi|723546680|ref|XP_010296679.1| | PREDICTED: spartin [Balearica regulorum gibbericeps] | 0.0 |
| pfu_aug2.0_100.1_00243.t1 | gi|733875098|ref|XP_010727247.1| | PREDICTED: spartin isoform X1 [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_100.1_00243.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00243.t1 atggcagaagctatgatgcctgatagagagaggacacggcgacctccgagacctcctgctcctaatttaaggtcagaggt cactgacatggaaacactacacaaatatcacgataaagcttataaactcattaacaaaggtctaagtctggacgaggaag gaaagacttcagaggcaataacaagttataatgacggtttgagatatataagtaagggacttgatatgaatgtggaaaat ttcaaatgttccgaggacgagaaaaatgaaggtaaaatgatgcagcagaaaatgatgaaaacacgtttacaaattgaata cagacttcaaagtcttgaaagacctcaaagcttgaatggcattcctcaagggccggaatcgatgggcgtcacattgccgt catatgaggaggccatatcatcaccaaattccataagcgacgaggcgttccaaatgctaggagattctattatgacagtg gatgaatcacaggacaatagcatggtggcgaacgctacagaaatgatgtgcattccagaaggtgttcaaatatttttcat atcccccacgggatacgtcagtgctccatcttacccgtcctctctgagaatgttcaaattcacagacgaggcacagagag acgcgggtgacgcagcgccacctgcctttatgcaggtagataactggtactatcccttagtaccaggtacttcaccagcc ctacatgccagtaatggagcttacatattccctgatacaatatctcaggaagaggcgttggaagtcgtgattcgtcagtc aatatttttaaaccaatcagagttcagaatggcagaagctatgatgtctgaaagagagaggacacggcgacctccaagac ctcctgctcctaatataaggtcagaggtcactgacatggaaacactacacaaatatcatgataaagcttataaactcatt aacaaaggtctaagtctggacgaggaaggaaagactgcagaggcaataacaagttataatgatggtttgagatatataag taagggacttgatatgaatgtggaaaatttcaaatgttctgaggacgagaaaaatgaaggtaaaatgatgcagcagaaaa tgatgaaaacacgtttacaaattgaatacagacttcaaactcttgaaagaactcaaagcttgaatggcattcctcaaggg ccagaatcgatgggcgttacattgccgtcatatgaggaggccatatcatcaccaaattccttaagcgacgaggcgttcca aatgctaggagattctattatgacagtggatgaatcacaggacaatagcatggtggcaaacgctacagaaatgatgtgca ttccggaaggtgttcaaatatttttcatatcccccacggggtacgtcagtgctccatcttacccgtcctctctgaggatg ttcaaattcacagacgaggcacagagagacacgggtgacacagctccacctgcctttatgcaggtagataactggtacta tcccttagtaccaggtacttcaccggccctacatgccagtaacggagcttacatattccctgatacaatatctcaggaag aaggatcggctgttggcctgttgttacctaatgaccttcaccctgcccagagacaacagtttgagcggcttctgaacagt tttaccaaccttcgtgagcagcatccctcaccgtcaatggaatccctaccctctgccccacccatggaggaagttatgga cgtaccacacccagcaacaagaggggaaaagacagctcctaaaagtaggatggctggtgagagaatggaagacgaagaag ttcgggatgtcagatttggtgaacgtagaaaggagactgccaaagaggaaggggaagatacatctacaagttcgaaaata gcaaggggaataactgtggcctctgaatggatctcctggggtgtaggtaaaggttcagaaaaggccagcagtctgttcag agcgggctcggagaagatcaaggctaggctcacccctgaagataaaccggcaaacgtcgatcctaaagtacagaaaagta ttgagtatgctagaaagggaacccatgtagcagtcactgtcagctcttttcttgtgacaaaattaggtgaagcaacgaaa gctattgcaaaggaagtggcgcctcatcttaggaagcaaggggaaaaactcctgccgaaatctgtgaagcaacaatcaat gagcgataatacacaatcaaaacttgatggagtcatagaggtggcagcttctggggtcaaaggttttggtgtggtataca tgtcactggaggctgcagctaaagctctagccaggaacatggctaatgagacagtatcagtggtggatcacaaatatggt agtcaggcagcaaagttaacagacaatgcactatttgctgttggtaatgttgccatgacagccaataatgttgacaactt tggggtcaaggccatcgctaagagagcagcaaaggatgctgggaaggaagtagttaaagacgctcataaagcatggaaag ctaaaaatgacaatgaaacatctatgaaggactatgatcatttacattactccaaaaagacaggatga |
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Protein
| Protein ID | pfu_aug2.0_100.1_00243.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00243.t1 MAEAMMPDRERTRRPPRPPAPNLRSEVTDMETLHKYHDKAYKLINKGLSLDEEGKTSEAITSYNDGLRYISKGLDMNVEN FKCSEDEKNEGKMMQQKMMKTRLQIEYRLQSLERPQSLNGIPQGPESMGVTLPSYEEAISSPNSISDEAFQMLGDSIMTV DESQDNSMVANATEMMCIPEGVQIFFISPTGYVSAPSYPSSLRMFKFTDEAQRDAGDAAPPAFMQVDNWYYPLVPGTSPA LHASNGAYIFPDTISQEEALEVVIRQSIFLNQSEFRMAEAMMSERERTRRPPRPPAPNIRSEVTDMETLHKYHDKAYKLI NKGLSLDEEGKTAEAITSYNDGLRYISKGLDMNVENFKCSEDEKNEGKMMQQKMMKTRLQIEYRLQTLERTQSLNGIPQG PESMGVTLPSYEEAISSPNSLSDEAFQMLGDSIMTVDESQDNSMVANATEMMCIPEGVQIFFISPTGYVSAPSYPSSLRM FKFTDEAQRDTGDTAPPAFMQVDNWYYPLVPGTSPALHASNGAYIFPDTISQEEGSAVGLLLPNDLHPAQRQQFERLLNS FTNLREQHPSPSMESLPSAPPMEEVMDVPHPATRGEKTAPKSRMAGERMEDEEVRDVRFGERRKETAKEEGEDTSTSSKI ARGITVASEWISWGVGKGSEKASSLFRAGSEKIKARLTPEDKPANVDPKVQKSIEYARKGTHVAVTVSSFLVTKLGEATK AIAKEVAPHLRKQGEKLLPKSVKQQSMSDNTQSKLDGVIEVAASGVKGFGVVYMSLEAAAKALARNMANETVSVVDHKYG SQAAKLTDNALFAVGNVAMTANNVDNFGVKAIAKRAAKDAGKEVVKDAHKAWKAKNDNETSMKDYDHLHYSKKTG |
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