Gene
| Gene Model ID | pfu_aug2.0_100.1_00245 |
|---|---|
| Locus | scaffold100.1 : 504079 ... 507886 : + |
| To GenomeBrowser | scaffold100.1:504079..507886 |
| Genes list of scaffold | scaffold100.1 |
| Synonym | pfu_aug1.0_6297.1_67406 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collagen alpha-4 chain-like | GO:0005578 GO:0016043 GO:0044763 GO:0048738 GO:0065007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_100.1_00245.t1 | 1 | 1 | VWA | 34 | 194 | 1.6e-37 | 128.9 | 9.79998e-41 | 2.4e-37 | 128.3 |
| pfu_aug2.0_100.1_00245.t1 | 2 | 1 | VWA_2 | 34 | 198 | 3.7e-17 | 62.9 | 1.5e-20 | 3.7e-17 | 62.9 |
| pfu_aug2.0_100.1_00245.t1 | 2 | 2 | VWA_2 | 204 | 272 | 3.7e-17 | 62.9 | 0.41 | 1000.0 | -0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_100.1_00245.t1 | gi|524882700|ref|XP_005097989.1| | PREDICTED: collagen alpha-4(VI) chain-like [Aplysia californica] | 1.0e-29 |
| pfu_aug2.0_100.1_00245.t1 | gi|524882676|ref|XP_005097977.1| | PREDICTED: cartilage matrix protein-like [Aplysia californica] | 1.0e-28 |
| pfu_aug2.0_100.1_00245.t1 | gi|524882669|ref|XP_005097974.1| | PREDICTED: collagen alpha-1(XII) chain-like [Aplysia californica] | 4.0e-28 |
| pfu_aug2.0_100.1_00245.t1 | gi|524892586|ref|XP_005102820.1| | PREDICTED: uncharacterized protein LOC101848762 [Aplysia californica] | 6.0e-28 |
| pfu_aug2.0_100.1_00245.t1 | gi|524882671|ref|XP_005097975.1| | PREDICTED: cartilage matrix protein-like [Aplysia californica] | 8.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_100.1_00245.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00245.t1 atgggccaaagtatagggttttggggcaccccccctgaatccgccactggcactgcatatttctatcgaaaatcatacat ctattttgtctctttctcagatgtggttttcgtccttgatcgatcaggaagcgtcacccaagatgattacgaagaggcgg tagactttgtttacaacgtcacaaaatggctgacgatcggaccttcaaatattcaagtgtcggcagtgtcttttgcttca aacgttgtcgaagaatttgatttagatgattacacaactaatacgacacttttagacgcaatagaaaatctgaaaagtac atcaacgggaggagggacttacacacatagtgcattagagtatgtccgagacaacagtctcacttccgggcatggtgcgc gcgcaaatgtaccaaaggccgttgttgttatgacggacggactttctgcaaacactataacgacgtctgctagagcaaca gatctccataatgatggagtggaagtatatgctattggtataggaaatgctgcttcgtctacaaatacagagttatcgga cattgccagtgacccagattcctattatctccaccaggtgaatctattccagtacctttgttccatagttcctgaaatag tccctaaattggataacgacacgctagccttgagtatattccgatgtcctacaccggcaacaacgaccacacccgttatg acattccttaataaaagtagaagtgctgacagtagcggggatacaacctcatcgtccagttcagactcggctactatagc tgctgcggcgtcggtggctgcagtaggggcggttggtgccgctgtgggtgcagcagttggcgtggccaagtatctcagta tgctaaaagctcaagcgccaaatcctttcgttcagtcaatagtggcccagtacaagaatgcgccactcggacagggcaaa gcaaagttcagtcacaagttcaaggcctctggaggtataccgaccatgccagccattacatctaagcctcccgtcatcac tgcttggcgatga |
|
Protein
| Protein ID | pfu_aug2.0_100.1_00245.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_100.1_00245.t1 MGQSIGFWGTPPESATGTAYFYRKSYIYFVSFSDVVFVLDRSGSVTQDDYEEAVDFVYNVTKWLTIGPSNIQVSAVSFAS NVVEEFDLDDYTTNTTLLDAIENLKSTSTGGGTYTHSALEYVRDNSLTSGHGARANVPKAVVVMTDGLSANTITTSARAT DLHNDGVEVYAIGIGNAASSTNTELSDIASDPDSYYLHQVNLFQYLCSIVPEIVPKLDNDTLALSIFRCPTPATTTTPVM TFLNKSRSADSSGDTTSSSSSDSATIAAAASVAAVGAVGAAVGAAVGVAKYLSMLKAQAPNPFVQSIVAQYKNAPLGQGK AKFSHKFKASGGIPTMPAITSKPPVITAWR |
|