Gene
| Gene Model ID | pfu_aug2.0_10002.1_09749 |
|---|---|
| Locus | scaffold10002.1 : 16 ... 6471 : + |
| To GenomeBrowser | scaffold10002.1:16..6471 |
| Genes list of scaffold | scaffold10002.1 |
| Synonym | pfu_aug1.0_12641.1_03260 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| isovaleryl- mitochondrial | GO:0003995 GO:0005739 GO:0050660 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10002.1_09749.t1 | 1 | 1 | Acyl-CoA_dh_N | 15 | 124 | 2.9e-35 | 121.2 | 7.7e-39 | 3.8e-35 | 120.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10002.1_09749.t1 | gi|524871584|ref|XP_005092564.1| | PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_10002.1_09749.t1 | gi|524871586|ref|XP_005092565.1| | PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_10002.1_09749.t1 | gi|676441253|ref|XP_009049437.1| | hypothetical protein LOTGIDRAFT_201069 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_10002.1_09749.t1 | gi|327280200|ref|XP_003224841.1| | PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_10002.1_09749.t1 | gi|736246708|ref|XP_010786701.1| | PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Notothenia coriiceps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10002.1_09749.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10002.1_09749.t1 atgtgcccagaccagggttcgaacccgggacctctatacctgcagctgagagaatcagttttccagttttgtcagaaaga attggcaccaaaagctgatcaaattgacaaagaaaatggctttccagagatgagagagttttggttgaagtgtggagaat taggtctgcttggtattacagccccaggaaagtatggaggtacagagatgtcttatttagatcattgtatcgtcatggag gagatgtcacgtgtatcggcagctatagcattaagttacggtgcccactcaaacctatgtgtcaatcagatagtccgaaa cggcagcgaagaacaaaaagaaaaatatttaccaaagttaattagtggtgagcatgtaggagcactcgccatgagtgagg ctaactcagggtcagatgttgtatctatgagattaaaagctgaaaagaaag |
|
Protein
| Protein ID | pfu_aug2.0_10002.1_09749.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10002.1_09749.t1 MCPDQGSNPGPLYLQLRESVFQFCQKELAPKADQIDKENGFPEMREFWLKCGELGLLGITAPGKYGGTEMSYLDHCIVME EMSRVSAAIALSYGAHSNLCVNQIVRNGSEEQKEKYLPKLISGEHVGALAMSEANSGSDVVSMRLKAEKK |
|