Gene
| Gene Model ID | pfu_aug2.0_1008.1_27975 |
|---|---|
| Locus | scaffold1008.1 : 28227 ... 45935 : - |
| To GenomeBrowser | scaffold1008.1:28227..45935 |
| Genes list of scaffold | scaffold1008.1 |
| Synonym | pfu_aug1.0_650.1_65566 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1008.1_27975.t1 | 1 | 1 | Lectin_C | 84 | 159 | 2.1e-07 | 31.5 | 2.8e-09 | 2.1e-05 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1008.1_27975.t1 | gi|260800291|ref|XP_002595067.1| | hypothetical protein BRAFLDRAFT_125768 [Branchiostoma floridae] | 3.0e-08 |
| pfu_aug2.0_1008.1_27975.t1 | gi|260794575|ref|XP_002592284.1| | hypothetical protein BRAFLDRAFT_206846 [Branchiostoma floridae] | 6.0e-08 |
| pfu_aug2.0_1008.1_27975.t1 | gi|557028540|ref|XP_006014299.1| | PREDICTED: lectin-like [Latimeria chalumnae] | 6.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_1008.1_27975.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1008.1_27975.t1 atggcgtccatcaagagaaatttaagtacatggaaacgtgcatctgtaggacttgtgattgcaaactttttcctactgct ttgtacatttgctattactttagcttggttcctacagcggcagaagttcgaaccacaagaacattcatctttgacttgct tcccgtctacgagtgctgacgaggattgtttgtcccgtgttgatgatttgtgctgtagtaatgtgacactgtcagatggt ataaaacataatgccaaggctgtttgcttggccgcattctctactttggtggagatagagaccaaggacgagagtgactt ccttgagacggaactacgtaaaagacatggcaataactggaatccaggtcaaccggacgatggtggtaatatagaagact gcatggagttacagggtatattctcatatcactggaatgaccataactgtgataacaaacaacattttatatgtgaggca gaggcgactgcagttgatccagaaattattggctag |
|
Protein
| Protein ID | pfu_aug2.0_1008.1_27975.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1008.1_27975.t1 MASIKRNLSTWKRASVGLVIANFFLLLCTFAITLAWFLQRQKFEPQEHSSLTCFPSTSADEDCLSRVDDLCCSNVTLSDG IKHNAKAVCLAAFSTLVEIETKDESDFLETELRKRHGNNWNPGQPDDGGNIEDCMELQGIFSYHWNDHNCDNKQHFICEA EATAVDPEIIG |
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