Gene
| Gene Model ID | pfu_aug2.0_1012.1_08087 |
|---|---|
| Locus | scaffold1012.1 : 67906 ... 69993 : + |
| To GenomeBrowser | scaffold1012.1:67906..69993 |
| Genes list of scaffold | scaffold1012.1 |
| Synonym | pfu_aug1.0_24996.1_40531 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1012.1_08087.t1 | 2 | 1 | zf-B_box | 18 | 60 | 2.2e-16 | 59.4 | 1.9e-09 | 5.6e-06 | 26.1 |
| pfu_aug2.0_1012.1_08087.t1 | 2 | 2 | zf-B_box | 76 | 113 | 2.2e-16 | 59.4 | 2.8e-13 | 8.3e-10 | 38.4 |
| pfu_aug2.0_1012.1_08087.t1 | 3 | 1 | NHL | 383 | 400 | 9.7e-06 | 25.2 | 0.00033 | 0.97 | 9.5 |
| pfu_aug2.0_1012.1_08087.t1 | 3 | 2 | NHL | 486 | 497 | 9.7e-06 | 25.2 | 0.0015 | 4.4 | 7.4 |
| pfu_aug2.0_1012.1_08087.t1 | 3 | 3 | NHL | 518 | 534 | 9.7e-06 | 25.2 | 0.0029 | 8.7 | 6.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1012.1_08087.t1 | gi|115688597|ref|XP_001200022.1| | 6.0e-10 | |
| pfu_aug2.0_1012.1_08087.t1 | gi|742157665|ref|XP_010882258.1| | PREDICTED: transcription intermediary factor 1-alpha-like [Esox lucius] | 8.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_1012.1_08087.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1012.1_08087.t1 atggcggcaggtggggattcagttcaggagtttccagtacaacatgtagttgagtgtgatgattgtggagagcaaggcga cgtacaatggttctgtaaaaactgcccggactcactctgtgacaagtgtaaggaggctcaccaaaggtcagggattctaa agaaacattccatcgtccctagatcaagcgttgtgttgcggacttacggaccagcaaaaatagcggagatgtgtaaaaca caccccgaaaaagacatatctacatattgtaacgactgcaaagttccatgttgtgcatcttgtctggttgagaaacatca gagacactctctatctcttattgaagatagatatctttcagccgagacaagactaaatgattacatcaaggtacttgaaa cagatgtatgtgggaaactgaaggacatgaggatcagaattgaagaagatatatccgtaggcgacaaatgcagcgaaagc ctcaacaaggaaattaaaacatttgaacaagaggtcgtgatggttgtccacaagtcttttcaaagccttcacaaggaagt tcatggtccacgtaatgaccttaacaagagccttgctgacatagatacacaattaaagaaagtttcagaagtaattcaag aatgcgagaaaaagatcaggatagggaatctagacattattcagttcataccaccagattcagaatctttcattccaaat ttgaatatttctgctcaagtggtccctagatttttgccaaatagagatatactggaaaatattaaacttcagttaggcag aattgaatatgcatctccagtgaagagagaaaacgacaaagaaaaggaaagagtggtatctttgcaagttaccattgtta gtacattcaaatccccgtttgaatgtacagcgataagtacgataggtgataacaaggcttggattatatatcaaagcagc acgtcaatgcgtttatatgattgtacaggtaaattcctgaaatcattcagtgttgaaaaaggcaaaagcatcacttacat ggcaatgaagaggactggtgaaatggtaatttcatgcagcgataagacaatacgcttgatttcgaatacaggagactgta caaagttaatcaggacagaccccctttctcctgcgggtatttgtgtcacagactctggtgacgtgatggtctgcatgaga ggtaaaccagaacaccgccatcttgcaatttactcagatgacatgatgcttaagaagtcggcaatgaaatcacagtactt caccgatccataccgtttactcgagatagagaacatgttgtacattataaactactgtaaaaacgtcgtttgtttgaatg tgcaaggcattatgaaatgggagtataaaggagcaaaagacatgcagttaaaaacttcttttagtgcaagagacatcagt aaggataaatatctgaatttactagttgtagattgtaataatcactgcgttcattacatcaatagagatggtcagttgat acaaatcatattaactgaaggacaaaccaccctgagttatccttgggggatctccgtagaccaggagactgatctggttt ggatgggaagctgtgtacgcaaagatgtgtgtattgcatcaatatctgaatga |
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Protein
| Protein ID | pfu_aug2.0_1012.1_08087.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1012.1_08087.t1 MAAGGDSVQEFPVQHVVECDDCGEQGDVQWFCKNCPDSLCDKCKEAHQRSGILKKHSIVPRSSVVLRTYGPAKIAEMCKT HPEKDISTYCNDCKVPCCASCLVEKHQRHSLSLIEDRYLSAETRLNDYIKVLETDVCGKLKDMRIRIEEDISVGDKCSES LNKEIKTFEQEVVMVVHKSFQSLHKEVHGPRNDLNKSLADIDTQLKKVSEVIQECEKKIRIGNLDIIQFIPPDSESFIPN LNISAQVVPRFLPNRDILENIKLQLGRIEYASPVKRENDKEKERVVSLQVTIVSTFKSPFECTAISTIGDNKAWIIYQSS TSMRLYDCTGKFLKSFSVEKGKSITYMAMKRTGEMVISCSDKTIRLISNTGDCTKLIRTDPLSPAGICVTDSGDVMVCMR GKPEHRHLAIYSDDMMLKKSAMKSQYFTDPYRLLEIENMLYIINYCKNVVCLNVQGIMKWEYKGAKDMQLKTSFSARDIS KDKYLNLLVVDCNNHCVHYINRDGQLIQIILTEGQTTLSYPWGISVDQETDLVWMGSCVRKDVCIASISE |
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