Gene
| Gene Model ID | pfu_aug2.0_1012.1_08091 |
|---|---|
| Locus | scaffold1012.1 : 106726 ... 119461 : + |
| To GenomeBrowser | scaffold1012.1:106726..119461 |
| Genes list of scaffold | scaffold1012.1 |
| Synonym | pfu_aug1.0_464.1_00312 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1012.1_08091.t1 | 3 | 1 | Patched | 112 | 441 | 1.90001e-40 | 138.5 | 2.1e-17 | 7.8e-14 | 50.5 |
| pfu_aug2.0_1012.1_08091.t1 | 3 | 1 | Sterol-sensing | 311 | 439 | 3.5e-25 | 88.2 | 1.9e-14 | 6.9e-11 | 41.8 |
| pfu_aug2.0_1012.1_08091.t1 | 3 | 2 | Patched | 462 | 745 | 1.90001e-40 | 138.5 | 5.2e-25 | 1.9e-21 | 75.7 |
| pfu_aug2.0_1012.1_08091.t1 | 3 | 2 | Sterol-sensing | 475 | 570 | 3.5e-25 | 88.2 | 1.3e-15 | 4.8e-12 | 45.5 |
| pfu_aug2.0_1012.1_08091.t1 | 3 | 3 | Patched | 973 | 1110 | 1.90001e-40 | 138.5 | 1.2e-07 | 0.00046 | 18.2 |
| pfu_aug2.0_1012.1_08091.t1 | 3 | 3 | Sterol-sensing | 984 | 1118 | 3.5e-25 | 88.2 | 1.7e-05 | 0.065 | 12.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1012.1_08091.t1 | gi|255083641|ref|XP_002508395.1| | resistance-nodulation-cell division superfamily [Micromonas sp. RCC299] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1012.1_08091.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1012.1_08091.t1 atgaaaatagccaatggaacaacagcaagcgacggggatacggaacgttccgggaataaatctcgcatggcgtgggggaa gggggacacggaggagctacagcggcagagaagggaggagaaaccgtttatatactgtagactggtggctaattacccga ggacaacatttgttaaaggtgacttaatggatagtcacagactcagagactatgcttggcgggacagggacaaatactcg aatgaattcgaacggacactaacggattcgggtttcgccaccttcgagagaggtctctactacagcgtgggtacggtgac attgtattacgatgccgaaggcgggaatattttcacgcctagtaacttacggaaaattcaagaaattgagaacgatctgg aatcatctcccggatatacttccacgtactgtatgacgcacaattcctcgttagtgtgcaagcctttcaagtctattcta cgctattttgatgggacatacaaacatatcagttccgttttcgacgatccaaatttcaacaatatagctgcagttcttta cgaagcaaacaccaataaccagactaacgtagattttcaatttttcttaccgaattcttacagcattactcctacctctg cgtatggttcaataacaagaagcgaaatgttatttggatgctctctcaccggtgccaccaaatgtaacacggactctgtt aaagacttgactcaagagtatctgaaatctaccttaaaagaaaaacttgagggatacttagaaacatcacaatttgattt ctattacttgtcgtacaacctgtggtcatcagatgtctttacacaagctataaaggacatgctgtgtgctgtcggtagta tgatgtttatttttatctttatgttaattcacacgagatcttttttcattaccggtcttggcatcatgagtatcttcgct tgtttcattggtactgagatcttatacgttggagttgtcggattcaaatacttcggatttttccatattctatcaatatt tatcattctcgggattggagctgacgatatttttgttttctatgactcctggcgcctcacggctttctctacgtacccaa gccttgcccataggctgtctgatgcatataaaaaatccgtactcagtatgttcattacgtctttaaccacgtgttcagct tttctctgtagcgccatttcgccgcttcttgccacaagatcttttggtgttttctccgcaatgttgataatttacaacta tttatcagttattatctattttccgactgtagttatgatgtatcatttgaagtttgaagncatcttcgcttgtttcattg gtacagagatcttatacgttggagttgtcggattcaaatacttcggatttttccatattctatcaatatttatcattctc gggattggagctgacgatatttttgttttctatgactcctggcgcctcacggctttctctacgtacccaagccttgccca taggctgtctgatgcatataaaaaatccgtactcagtatgttcattacgtctttaaccacatgttcagcttttctctgta gcgccatttcgccgcttcttgctacaagatcttttggtgttttctccgcaatgttgataatttacaactatttatcagtt attatctattttccgactgtagttatgatgtatcatttgaagtttgaagattggcattggccatgctgtagaaagtgtgc acagagtagtgaaataggtgacaataacgagaaatcttctgaagagaaagagaagccccatgttgtcgataacatgcaag gtacggacgtttatatcatatctgagaagcaggaaatcatatccaataccactgactcttcacaggaagccgtacaaaac caaaatgcgaaaaatgaattaaaaatgaaagaatttatgagcgaaagaaacgcagaaacgtataacgtgggggattctaa aagagaaaataacgatggcattactacaaagaaatcacatcccaaacgacagaaaaagctggtaatatttttcagggatt attacttcaagttcgttacacataaaatagccaaatggattgttttaccaatatttgccatttttgtgatcgtctttgga tatcaagcctcaaaactggaaccggataatgaacagctgaagatatttaaagattcccacagatacaccaaaagtagaaa tgctgagctttacagctttgtacagagcacttcttctagcttggtaacaatctacgtagcttggggtctgggactgaagg acagaagcgaatgccacttttcctccattgactgtcgaggcacaaatgtatacgacagctcttttgatcccaatcctgtg gccaatcaacaagccttaaaaagtttttgtgatgatttgtatggtatgactacaagtgagctgaacgacttcagaataaa gattgactcaaatggagatccagagataggatgttttactagaaatcttgaaacctatctcacgatacctatgcagtatt ggatgtacaagggatatacggatacatacactgaggactacggcatgtataacacattgtttggagagcaggaaacaagc tacacccaaaacttactgtccgatgcatcaataaaatatgggaacaaactgatgtatattggtattcagatcaacaccac tatcaacatgagaaccacgggttattctaaaggaattccactcatagagaaatgggaaacctttatcaacaataagatgt ctgcaatgccatccggtgttaacagcggttatcaactgacaagacagagttggcactggatttacgtacaaaaggctttg gcagataatgcagtactgggtatcattattggagtgagcatagcatttcccatactaacactagctacaatgaacatagt gataggctttctggccacaacatccatatgttgtactacgatctgtgttataggggtcataccgtcagccggatggaaac ttgggctgctcgtgtccttgaacatgtgtctagtggtgggtctggccgttgattacgtggtgcacctggcagagggctac cacctgtcattacataaggacaggctgagcaggacacgtgacatgttagaggagatgggaatgtccgtcttctcaggggc ctgtacaacactaggagcatcgttattcatgtttttatcacaagtacagttctttctacagtttggtatattcgtcttct gtacaataggtttctccatatttttctctttaggtctctttaccatactgatgggcctcataggtcctcaaaatgaaata ggagacctcagagtgattgtgcggtggtgtaagaggaaattcaagaggggaaagcaagttcatcatacgcaggaggccca gaaaacaaaacgtgagctgtacaacagatacacaaactgtcaaaattag |
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Protein
| Protein ID | pfu_aug2.0_1012.1_08091.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1012.1_08091.t1 MKIANGTTASDGDTERSGNKSRMAWGKGDTEELQRQRREEKPFIYCRLVANYPRTTFVKGDLMDSHRLRDYAWRDRDKYS NEFERTLTDSGFATFERGLYYSVGTVTLYYDAEGGNIFTPSNLRKIQEIENDLESSPGYTSTYCMTHNSSLVCKPFKSIL RYFDGTYKHISSVFDDPNFNNIAAVLYEANTNNQTNVDFQFFLPNSYSITPTSAYGSITRSEMLFGCSLTGATKCNTDSV KDLTQEYLKSTLKEKLEGYLETSQFDFYYLSYNLWSSDVFTQAIKDMLCAVGSMMFIFIFMLIHTRSFFITGLGIMSIFA CFIGTEILYVGVVGFKYFGFFHILSIFIILGIGADDIFVFYDSWRLTAFSTYPSLAHRLSDAYKKSVLSMFITSLTTCSA FLCSAISPLLATRSFGVFSAMLIIYNYLSVIIYFPTVVMMYHLKFEXIFACFIGTEILYVGVVGFKYFGFFHILSIFIIL GIGADDIFVFYDSWRLTAFSTYPSLAHRLSDAYKKSVLSMFITSLTTCSAFLCSAISPLLATRSFGVFSAMLIIYNYLSV IIYFPTVVMMYHLKFEDWHWPCCRKCAQSSEIGDNNEKSSEEKEKPHVVDNMQGTDVYIISEKQEIISNTTDSSQEAVQN QNAKNELKMKEFMSERNAETYNVGDSKRENNDGITTKKSHPKRQKKLVIFFRDYYFKFVTHKIAKWIVLPIFAIFVIVFG YQASKLEPDNEQLKIFKDSHRYTKSRNAELYSFVQSTSSSLVTIYVAWGLGLKDRSECHFSSIDCRGTNVYDSSFDPNPV ANQQALKSFCDDLYGMTTSELNDFRIKIDSNGDPEIGCFTRNLETYLTIPMQYWMYKGYTDTYTEDYGMYNTLFGEQETS YTQNLLSDASIKYGNKLMYIGIQINTTINMRTTGYSKGIPLIEKWETFINNKMSAMPSGVNSGYQLTRQSWHWIYVQKAL ADNAVLGIIIGVSIAFPILTLATMNIVIGFLATTSICCTTICVIGVIPSAGWKLGLLVSLNMCLVVGLAVDYVVHLAEGY HLSLHKDRLSRTRDMLEEMGMSVFSGACTTLGASLFMFLSQVQFFLQFGIFVFCTIGFSIFFSLGLFTILMGLIGPQNEI GDLRVIVRWCKRKFKRGKQVHHTQEAQKTKRELYNRYTNCQN |
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