Gene
| Gene Model ID | pfu_aug2.0_1012.1_08092 |
|---|---|
| Locus | scaffold1012.1 : 126036 ... 140553 : + |
| To GenomeBrowser | scaffold1012.1:126036..140553 |
| Genes list of scaffold | scaffold1012.1 |
| Synonym | pfu_aug1.0_464.1_00313 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1012.1_08092.t1 | 1 | 1 | Globin | 9 | 116 | 2.8e-18 | 66.2 | 2.8e-22 | 4.1e-18 | 65.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1012.1_08092.t1 | gi|390341504|ref|XP_003725467.1| | 1.0e-24 | |
| pfu_aug2.0_1012.1_08092.t1 | gi|260788354|ref|XP_002589215.1| | hypothetical protein BRAFLDRAFT_74626 [Branchiostoma floridae] | 2.0e-24 |
| pfu_aug2.0_1012.1_08092.t1 | gi|18859087|ref|NP_571928.1| | neuroglobin [Danio rerio] | 6.0e-22 |
| pfu_aug2.0_1012.1_08092.t1 | gi|390341474|ref|XP_001199205.2| | PREDICTED: uncharacterized protein LOC763287 isoform X1 [Strongylocentrotus purpuratus] | 2.0e-21 |
| pfu_aug2.0_1012.1_08092.t1 | gi|736248887|ref|XP_010787405.1| | PREDICTED: neuroglobin [Notothenia coriiceps] | 5.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_1012.1_08092.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1012.1_08092.t1 atgaacacaattatatcggatcgacagaaagcactagtgacagaatcctggaagtccttcactaaacatggtgacctgcc tgaccttgggatacccatgtttctcaaattatttgaggaccatcctgaggtaaagtccttattttcctttatgagagctg agggtatatcctcccagcatccccagttcagacgccatgccaacagagtgttcgaaatgatagggtcggctgtcggcggc atagacgatttggacacactcggcgacgtactgaaggagcttggtgctaaccattacaaatacggcacacaaagcgcaca tttacctgctgtaggaaacgctttgttatttgccctggaaaaagaactgagagaagaattcactaacgaagtaaggaatg cttggctttcattttactctgttgtgagtaaatgtttctctgaaggtttggagaagaaaatcaaagcgatggaagatgat aattcctga |
|
Protein
| Protein ID | pfu_aug2.0_1012.1_08092.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1012.1_08092.t1 MNTIISDRQKALVTESWKSFTKHGDLPDLGIPMFLKLFEDHPEVKSLFSFMRAEGISSQHPQFRRHANRVFEMIGSAVGG IDDLDTLGDVLKELGANHYKYGTQSAHLPAVGNALLFALEKELREEFTNEVRNAWLSFYSVVSKCFSEGLEKKIKAMEDD NS |
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