Gene
| Gene Model ID | pfu_aug2.0_1015.1_18019 |
|---|---|
| Locus | scaffold1015.1 : 13492 ... 19365 : - |
| To GenomeBrowser | scaffold1015.1:13492..19365 |
| Genes list of scaffold | scaffold1015.1 |
| Synonym | pfu_aug1.0_17411.1_11030 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| apobec1 complementation factor-like | GO:0000166 GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1015.1_18019.t1 | 4 | 1 | RRM_6 | 9 | 20 | 9.5e-30 | 102.3 | 3.2 | 8000.0 | -3.1 |
| pfu_aug2.0_1015.1_18019.t1 | 3 | 1 | RRM_1 | 49 | 114 | 1.09301e-43 | 146.7 | 3.8e-22 | 9.5e-19 | 66.8 |
| pfu_aug2.0_1015.1_18019.t1 | 4 | 2 | RRM_6 | 49 | 115 | 9.5e-30 | 102.3 | 2.3e-13 | 5.6e-10 | 39.0 |
| pfu_aug2.0_1015.1_18019.t1 | 3 | 1 | RRM_5 | 67 | 118 | 1.1e-16 | 60.3 | 1.5e-08 | 3.8e-05 | 23.4 |
| pfu_aug2.0_1015.1_18019.t1 | 3 | 2 | RRM_1 | 129 | 190 | 1.09301e-43 | 146.7 | 1.2e-12 | 3.1e-09 | 36.3 |
| pfu_aug2.0_1015.1_18019.t1 | 4 | 3 | RRM_6 | 129 | 197 | 9.5e-30 | 102.3 | 2.2e-10 | 5.4e-07 | 29.5 |
| pfu_aug2.0_1015.1_18019.t1 | 3 | 2 | RRM_5 | 168 | 206 | 1.1e-16 | 60.3 | 1.7e-06 | 0.0042 | 16.9 |
| pfu_aug2.0_1015.1_18019.t1 | 3 | 3 | RRM_1 | 216 | 281 | 1.09301e-43 | 146.7 | 2.2e-14 | 5.5e-11 | 41.9 |
| pfu_aug2.0_1015.1_18019.t1 | 4 | 4 | RRM_6 | 216 | 282 | 9.5e-30 | 102.3 | 1.4e-10 | 3.5e-07 | 30.0 |
| pfu_aug2.0_1015.1_18019.t1 | 3 | 3 | RRM_5 | 244 | 283 | 1.1e-16 | 60.3 | 1.9e-06 | 0.0047 | 16.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1015.1_18019.t1 | gi|260812205|ref|XP_002600811.1| | hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1015.1_18019.t1 | gi|524898701|ref|XP_005105796.1| | PREDICTED: APOBEC1 complementation factor-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1015.1_18019.t1 | gi|585675841|ref|XP_006818852.1| | PREDICTED: APOBEC1 complementation factor isoform X5 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1015.1_18019.t1 | gi|573883654|ref|XP_006629983.1| | PREDICTED: RNA-binding protein 47-like isoform X2 [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1015.1_18019.t1 | gi|585675833|ref|XP_006818850.1| | PREDICTED: APOBEC1 complementation factor isoform X3 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1015.1_18019.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18019.t1 atgcagtcgtctagttctccgaacgatgaaaaattgcttaaacttatggaacgtactggatatagcatgattcaagagaa cggtcaacgaaaatatggacctccacctggatggaatggtcctccacctgctcgtggttgtgaaatattcgtgggtaaaa tacctcgtgactgctatgaagatgaactcgttcctgtgtttgagagaattggtaaaatatacgaattacggttgatgatg gatttttctggaagcaacaggggctatgcattcgtgcaatatacaaataaaagtgatgcgaaaaaggcagtgagggaatt gaacaatttcgagataagaaagggtcgtcttttgggagtttgtgtttcagttgacaactgcagattgttcgttggaggta tacctaagacgaaaactagagaagaaattcttcaagaaatgaacaaagtaactgagggtgttgtcgatgtcattgtttat cccagtgccgttgataaaagcaaaaatcgcggctttgcgtttgttgaatatgaatcgcatcgcgctgcagcgatggcaag aagaaaactaattccagggagaattcaattatggggacatcagattgctgtggattgggctgaaccagaacaagaagtga agatcttgtatgttaggaatctcatgcttaccacaacagaggaaacaattcagcagtatttcacaaataaacttggaaag gacaacaccatagagagagtaaaaaaactgaaggactatgcatttgtacatttcaaagaaagagaagatgcactaaaagc tatagagctcaccaataatggcacaatagatggtgcaaaagttgaagtggttttagcaaagcctgttgacaaaaatgact acagaatatatgcaagaggaaagactgccatgcaacagtggaccttatttactgtatgtgcacttattatagctctacga caaaagtttagtgcaaagaggacaaaagcctaa |
|
Protein
| Protein ID | pfu_aug2.0_1015.1_18019.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18019.t1 MQSSSSPNDEKLLKLMERTGYSMIQENGQRKYGPPPGWNGPPPARGCEIFVGKIPRDCYEDELVPVFERIGKIYELRLMM DFSGSNRGYAFVQYTNKSDAKKAVRELNNFEIRKGRLLGVCVSVDNCRLFVGGIPKTKTREEILQEMNKVTEGVVDVIVY PSAVDKSKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVKILYVRNLMLTTTEETIQQYFTNKLGK DNTIERVKKLKDYAFVHFKEREDALKAIELTNNGTIDGAKVEVVLAKPVDKNDYRIYARGKTAMQQWTLFTVCALIIALR QKFSAKRTKA |
|