Gene
| Gene Model ID | pfu_aug2.0_1015.1_18021 |
|---|---|
| Locus | scaffold1015.1 : 26076 ... 42105 : - |
| To GenomeBrowser | scaffold1015.1:26076..42105 |
| Genes list of scaffold | scaffold1015.1 |
| Synonym | pfu_aug1.0_17411.1_11031 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1015.1_18021.t1 | 1 | 1 | PHD | 165 | 208 | 4.3e-08 | 32.7 | 2.9e-11 | 8.7e-08 | 31.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1015.1_18021.t1 | gi|241608373|ref|XP_002405960.1| | integrator complex subunit, putative [Ixodes scapularis] | 3.0e-37 |
| pfu_aug2.0_1015.1_18021.t1 | gi|524899908|ref|XP_005106380.1| | PREDICTED: integrator complex subunit 12-like isoform X2 [Aplysia californica] | 5.0e-33 |
| pfu_aug2.0_1015.1_18021.t1 | gi|524899906|ref|XP_005106379.1| | PREDICTED: integrator complex subunit 12-like isoform X1 [Aplysia californica] | 6.0e-33 |
| pfu_aug2.0_1015.1_18021.t1 | gi|584040793|ref|XP_006778966.1| | PREDICTED: integrator complex subunit 12 isoform X1 [Myotis davidii] | 7.0e-33 |
| pfu_aug2.0_1015.1_18021.t1 | gi|345795805|ref|XP_545012.3| | PREDICTED: integrator complex subunit 12 isoform X3 [Canis lupus familiaris] | 2.0e-32 |
Transcript
| Transcript ID | pfu_aug2.0_1015.1_18021.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18021.t1 atggcaacaacagacctagatcctgtttttgtgaaagctttacgacttctacattcaaaacgtgaagatgcagccgacca actcaaacagatgcttgatgatgtcatcagtcaacgcaaaggtctaaagagttcatctgacagtaaagacagtaagtcat caaagaaacattcagaggatgataaagtaaagaggagggaggcagagaaaaggagtctggaaaagtcaaaaggagatgtc ttggatgaagatttacctgtgataaagaaagtaaagaaggagtctcctagaccagcatcgagcccctcaaggtcagacga gggacggcagaaaacagatggtaaacatgagaacatggagaagtcaaggaaagacaaggaggatagggagaggtccagga aggatggagagaagaaaataaaacatgataaagaaaaggagagagagaaagaaaaggaaagaagtaagcaaaagaagagc caatttgatgtaaagtctggtaatcagctagtggaatgtcaggagtgccatcacttataccaccaggaatgccacaagcc accagtaacagagtacgatgtacatgatccacgttttgtgtggtactgtcatagatgtaccaaaaacctcaagaaaatag caagtggaggtaagggcgggaaaagcaaatcttctggatcagaggaagttcgggataagccgagatctcagccaccatca agcaccggaaacataacgagtagtgccggaaatgtgaacgtatctaagcagccaaagggagataactcctctggacccct attctcattcaggagatcagatggcaaggccactacaggtagagagccatcatccactaacactcctggagctaaaccta tgagtggattagccagcttggctgccaatctctctgggaaaactgaacagacaaaagttacaaaacctgacaatggatca aagccatctagatccgacccattaaggagtagctttggaaaagctgaacaatctgataaagtatctttgttaaatcaatc acaaagaaagccagagggacctaaacctgtagtgaaaacaagtgatcaaagcaaaccgagtgttaaacctacatcaggca gtatcaaacaaactcaaggtggtgctagctcagtagttaatgctgagaaacgggtacaaatgatgaagaaaaaagcagct atcaaaattcaggagaaaagagcctctctcaaataa |
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Protein
| Protein ID | pfu_aug2.0_1015.1_18021.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18021.t1 MATTDLDPVFVKALRLLHSKREDAADQLKQMLDDVISQRKGLKSSSDSKDSKSSKKHSEDDKVKRREAEKRSLEKSKGDV LDEDLPVIKKVKKESPRPASSPSRSDEGRQKTDGKHENMEKSRKDKEDRERSRKDGEKKIKHDKEKEREKEKERSKQKKS QFDVKSGNQLVECQECHHLYHQECHKPPVTEYDVHDPRFVWYCHRCTKNLKKIASGGKGGKSKSSGSEEVRDKPRSQPPS STGNITSSAGNVNVSKQPKGDNSSGPLFSFRRSDGKATTGREPSSTNTPGAKPMSGLASLAANLSGKTEQTKVTKPDNGS KPSRSDPLRSSFGKAEQSDKVSLLNQSQRKPEGPKPVVKTSDQSKPSVKPTSGSIKQTQGGASSVVNAEKRVQMMKKKAA IKIQEKRASLK |
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