Gene
| Gene Model ID | pfu_aug2.0_1015.1_18022 |
|---|---|
| Locus | scaffold1015.1 : 44556 ... 62060 : + |
| To GenomeBrowser | scaffold1015.1:44556..62060 |
| Genes list of scaffold | scaffold1015.1 |
| Synonym | pfu_aug1.0_15441.1_54186 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| taf5-like rna polymerase ii p300 cbp-associated factor-associated factor 65 kda subunit 5l-like | GO:0005634 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1015.1_18022.t1 | 1 | 1 | TFIID_90kDa | 44 | 178 | 3.6e-30 | 104.8 | 1.4e-33 | 5.3e-30 | 104.3 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 1 | WD40 | 237 | 270 | 0.0 | 180.4 | 3.3e-05 | 0.12 | 12.2 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 2 | WD40 | 311 | 347 | 0.0 | 180.4 | 1.8e-12 | 6.8e-09 | 35.2 |
| pfu_aug2.0_1015.1_18022.t1 | 4 | 1 | Nup160 | 328 | 353 | 3.6e-07 | 28.6 | 1.9e-05 | 0.069 | 11.2 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 3 | WD40 | 356 | 388 | 0.0 | 180.4 | 6.6e-10 | 2.5e-06 | 27.1 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 4 | WD40 | 395 | 430 | 0.0 | 180.4 | 3.3e-16 | 1.2e-12 | 47.1 |
| pfu_aug2.0_1015.1_18022.t1 | 4 | 2 | Nup160 | 405 | 441 | 3.6e-07 | 28.6 | 0.0029 | 11.0 | 4.0 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 5 | WD40 | 436 | 473 | 0.0 | 180.4 | 2.2e-14 | 8.2e-11 | 41.3 |
| pfu_aug2.0_1015.1_18022.t1 | 4 | 3 | Nup160 | 446 | 479 | 3.6e-07 | 28.6 | 0.00023 | 0.87 | 7.6 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 6 | WD40 | 479 | 504 | 0.0 | 180.4 | 8.0e-06 | 0.03 | 14.2 |
| pfu_aug2.0_1015.1_18022.t1 | 4 | 4 | Nup160 | 491 | 627 | 3.6e-07 | 28.6 | 0.0033 | 12.0 | 3.8 |
| pfu_aug2.0_1015.1_18022.t1 | 7 | 7 | WD40 | 608 | 621 | 0.0 | 180.4 | 0.00032 | 1.2 | 9.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1015.1_18022.t1 | gi|676430356|ref|XP_009045899.1| | hypothetical protein LOTGIDRAFT_237682 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1015.1_18022.t1 | gi|585708855|ref|XP_006824247.1| | PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1015.1_18022.t1 | gi|524909010|ref|XP_005109591.1| | PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1015.1_18022.t1 | gi|260786789|ref|XP_002588439.1| | hypothetical protein BRAFLDRAFT_274913 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1015.1_18022.t1 | gi|694832298|ref|XP_009469114.1| | PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2 [Nipponia nippon] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1015.1_18022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18022.t1 atgaaagtgaaagtgaaagactcagaaactgcatcaaaaaaagaaggaaaatggatgcagagtatatctgacatggccct gaagaattccaccaatggagagaccactgtagaaaatgtcctagctctcagcagtatatcaggagatgccacaggctgtg aacaacagttcaataggcttaaaaactttatcaatgaagctgtggagccttacagagaggaattacaactggtcctatac cctatgtttgtacagatatatttacaggttctttgtaacgggcataaagcagcagctaacaagttttacagcaggcatgt aaagttatttgagaataatacaaactatgctgccatgttagattctttacaaaaactgaacagtagagatgatgtgtcag gctgtcttagggccacagattttagggaaaataaatacactgtaaacttgtcagaggaagcactagattacttaaaaaga cacttaaagcttgaagacaacatgatgctgcttcaagtttttaaccaacatgtaaaagttgagatatctggtgaagaaaa aagagattatgatcttagagaaggagccaatactgccgataaagacaccaagggggataactcagggagtaatatgatgt tacagcttcaacaggccataaagaatgtcagacaaggaccactgtgtgccccatccatctgcttctatactttcctaaat gcacatcaaggattatgcactgtggatatttctgccaataaaacgttgctcagtgctgggtttgaggactcgtccatcaa attatggagtattactcccggtatgatccagtctaagccagccggtattgatccatcaaagatatatatagctgctgact actggaggatagaggaccacacagaggatgatagtaaagtgagatatgaggaggtggtaacaatgaggggtcactctggt actgtatataagacatgttttacctcagattgtaaatatctgctgtcagcatcagaggattatacagtgagattatggga tttggaaacacacacaaatcgagtcagctatcggggtcacagctaccctatctgggatatggacaccagtagtacagggg gatattttgctacagcatcacaggacaggacatcaaaactgtggatcacagacagaatttaccctatcagatcctttact ggacatactctagatgttgattgtgtgaagtttcaccctaactgtaactacatagcgactggatctagtgataagacagt acgactgtggacgttacaggatggtaagagtgtacggttaatgcacggacatcgtggtgctgtaatggcactggcattct cccctaacggcacactactggcatctgcaggagatgacaaaagagtaagagtttgggacctgagtactggtacactatat aaagaattcagaggtcatactgatatcatacacactctgtcattcagtagtgacagctccatgttagcatctgagaaaac cgggataacagggtgctctggaattagtgaacaggacagtagtgagttagttatactccagttttcatctggtgatttag ttatactccagttatcatcttgtgagttaggtatactccatgttagcatctgtgttcatctggagggatggactgcacca ttaaagtatgggatgttaggaaaggcaccagctcatctagtctagaaaactgggataacagggtgctctggaattagtga acaggacagtagtgagttagttatactccagttttcatctggtgagttagttatactccagttatcatcttgagggatgg actgcactattaaagtatgggatgttaggaaaggcaccagctcatctagtctagcagagggagggagctctacagagtta ctgggctcatatcccaccaagtctgctccagtcatctacctaaacttctccaagtataacctattacaggcagctggggc agtctga |
|
Protein
| Protein ID | pfu_aug2.0_1015.1_18022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18022.t1 MKVKVKDSETASKKEGKWMQSISDMALKNSTNGETTVENVLALSSISGDATGCEQQFNRLKNFINEAVEPYREELQLVLY PMFVQIYLQVLCNGHKAAANKFYSRHVKLFENNTNYAAMLDSLQKLNSRDDVSGCLRATDFRENKYTVNLSEEALDYLKR HLKLEDNMMLLQVFNQHVKVEISGEEKRDYDLREGANTADKDTKGDNSGSNMMLQLQQAIKNVRQGPLCAPSICFYTFLN AHQGLCTVDISANKTLLSAGFEDSSIKLWSITPGMIQSKPAGIDPSKIYIAADYWRIEDHTEDDSKVRYEEVVTMRGHSG TVYKTCFTSDCKYLLSASEDYTVRLWDLETHTNRVSYRGHSYPIWDMDTSSTGGYFATASQDRTSKLWITDRIYPIRSFT GHTLDVDCVKFHPNCNYIATGSSDKTVRLWTLQDGKSVRLMHGHRGAVMALAFSPNGTLLASAGDDKRVRVWDLSTGTLY KEFRGHTDIIHTLSFSSDSSMLASEKTGITGCSGISEQDSSELVILQFSSGDLVILQLSSCELGILHVSICVHLEGWTAP LKYGMLGKAPAHLVXKTGITGCSGISEQDSSELVILQFSSGELVILQLSSXGMDCTIKVWDVRKGTSSSSLAEGGSSTEL LGSYPTKSAPVIYLNFSKYNLLQAAGAV |
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