Gene
| Gene Model ID | pfu_aug2.0_1015.1_18023 |
|---|---|
| Locus | scaffold1015.1 : 65556 ... 75550 : + |
| To GenomeBrowser | scaffold1015.1:65556..75550 |
| Genes list of scaffold | scaffold1015.1 |
| Synonym | pfu_aug1.0_6789.1_60105 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1015.1_18023.t2 | 2 | 1 | Neur_chan_LBD | 26 | 120 | 5.2e-36 | 123.8 | 2.2e-23 | 1.7e-19 | 69.8 |
| pfu_aug2.0_1015.1_18023.t2 | 2 | 2 | Neur_chan_LBD | 167 | 267 | 5.2e-36 | 123.8 | 6.9e-18 | 5.1e-14 | 51.9 |
| pfu_aug2.0_1015.1_18023.t2 | 1 | 1 | Neur_chan_memb | 276 | 410 | 8.9e-10 | 38.8 | 1.4e-13 | 1.0e-09 | 38.6 |
Transcript
| Transcript ID | pfu_aug2.0_1015.1_18023.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18023.t1 atgactagagaacgcgtggagccacagtacacacaggagtgtgatcacgagaaagaaaggaaggatgttttgtgtacaag tcatactgagatgaacagaaatgacagaagaataacatggactgatgtgggaaaagcgagtgatgtagtgtttttcttta taacaataactgaagggattttgatgacacttgggtggaaggaagtactcatagatttctacaagtgttgtccttcactt ttctttgtattttatgaggatgtgtcaacaggtggtgccgccacaggcaaaagtagaaaatcagaaaccgaaggcataca aaatcaggataaaacaggaaccaaatcaaacaaacaaaaacctccaccatatgaaacgaagcgaacttccgatatgggac catacactctgaacgataccgacaccttacgagctgaccttttagagaattataacagtgacactaggggaagcatggac caaacacgccctacaaacctcagggtacagttctttttctacaatataaacgagtttgacgaagtcttggggatattttc tgtcaccggatttttctatatttactggacggacgagcggatgatttgggatccacaacactataatgggactacaaaaa ttacatttcccgcatccaaaatttggactccaacaattctgcttggtaattctaacgacgaatctgaaattcagagtttg ggatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatggttgaacgtgaggtttgacgctaacgggacagcatcct ggtccccaggagctatgttcaagtcattctgtaaacctgacgtcatcgagtatccttatgacactcaaatttgtagcttg aacttcatcccttggggtcatgatccgggtgaaattcgtttcacacctctcagtaaacacgtgaacatggatttgtacat ggagagcggcctttgggagataatcaacaccagtgtcacaacaatggaggttcccattgaagcagacactttccaacttc tagttctttcgttctccttgaagcgcagagcattattttaccttatgaacatgattcttcctatagcagtgatgggaggg ctgaatttgtttgtttttattttaccacaagaatcaggagagcgtataggatactcaatcacactcttgttagctatatg tgtatatttgaccattgcgtcagacaatcttccccagtcgtcattcccgtccgtatccttactgtgcgccaagctattct ttgacatgattataagcagtttcgtcttgctgtttaccatacttggattgagatgttatcacactgacgatggtgttcgg gttccatcatgtctcgtcttactcaccaaatgtgttctctgtaagtgctgcattactagagaacgcatggaagaaccata cgtggtggaacacgaacacgagaaagaacgaaataatacttcaaataggaatcaaactgacatcaacaaaaatgagagaa gagtgacatggactgatgtagggaaagctagcgatgtagtgtttttctgtataacgtttctggctttcacatcgtctcat ttggcttattatcttttcctgaaatttacataa |
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| Transcript ID | pfu_aug2.0_1015.1_18023.t2 |
| Definition | - |
>pfu_aug2.0_1015.1_18023.t2 atggacagaaggatttatctattcttttctctttttgtccgaatatgtcagccatacactctgaacgataccgacacctt acgagctgaccttttagagaattataacagtgacactaggggaagcatggaccaaacacgccctacaaacctcagggtac agttctttttctacaatataaacgagtttgacgaagtcttggggatattttctgtcaccggatttttctatatttactgg acggacgagcggatgatttgggatccacaacactataatgggactacaaaaattacatttcccgcatccaaaatttggac tccaacaattctgcttggtaattctaacgacgaatctgaaattcagagtttgggatacgnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnaatggttgaacgtgaggtttgacgctaacgggacagcatcctggtccccaggagctatgttcaagtcatt ctgtaaacctgacgtcatcgagtatccttatgacactcaaatttgtagcttgaacttcatcccttggggtcatgatccgg gtgaaattcgtttcacacctctcagtaaacacgtgaacatggatttgtacatggagagcggcctttgggagataatcaac accagtgtcacaacaatggaggttcccattgaagcagacactttccaacttctagttctttcgttctccttgaagcgcag agcattattttaccttatgaacatgattcttcctatagcagtgatgggagggctgaatttgtttgtttttattttaccac aagaatcaggagagcgtataggatactcaatcacactcttgttagctatatgtgtatatttgaccattgcgtcagacaat cttccccagtcgtcattcccgtccgtatccttactgtgcgccaagctattctttgacatgattataagcagtttcgtctt gctgtttaccatacttggattgagatgttatcacactgacgatggtgttcgggttccatcatgtctcgtcttactcacca aatgtgttctctgtaagtgctgcattactagagaacgcatggaagaaccatacgtggtggaacacgaacacgagaaagaa cgaaataatacttcaaataggaatcaaactgacatcaacaaaaatgagagaagagtgacatggactgatgtagggaaagc tagcgatgtagtgtttttctgtataacgtttctggctttcacatcgtctcatttggcttattatcttttcctgaaattta cataa |
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Protein
| Protein ID | pfu_aug2.0_1015.1_18023.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18023.t1 MTRERVEPQYTQECDHEKERKDVLCTSHTEMNRNDRRITWTDVGKASDVVFFFITITEGILMTLGWKEVLIDFYKCCPSL FFVFYEDVSTGGAATGKSRKSETEGIQNQDKTGTKSNKQKPPPYETKRTSDMGPYTLNDTDTLRADLLENYNSDTRGSMD QTRPTNLRVQFFFYNINEFDEVLGIFSVTGFFYIYWTDERMIWDPQHYNGTTKITFPASKIWTPTILLGNSNDESEIQSL GYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLNVRFDANGTASWSPGAMFKSFCKPDVIEYPYDTQICSL NFIPWGHDPGEIRFTPLSKHVNMDLYMESGLWEIINTSVTTMEVPIEADTFQLLVLSFSLKRRALFYLMNMILPIAVMGG LNLFVFILPQESGERIGYSITLLLAICVYLTIASDNLPQSSFPSVSLLCAKLFFDMIISSFVLLFTILGLRCYHTDDGVR VPSCLVLLTKCVLCKCCITRERMEEPYVVEHEHEKERNNTSNRNQTDINKNERRVTWTDVGKASDVVFFCITFLAFTSSH LAYYLFLKFT |
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| Protein ID | pfu_aug2.0_1015.1_18023.t2 |
| Definition | - |
>pfu_aug2.0_1015.1_18023.t2 MDRRIYLFFSLFVRICQPYTLNDTDTLRADLLENYNSDTRGSMDQTRPTNLRVQFFFYNINEFDEVLGIFSVTGFFYIYW TDERMIWDPQHYNGTTKITFPASKIWTPTILLGNSNDESEIQSLGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXWLNVRFDANGTASWSPGAMFKSFCKPDVIEYPYDTQICSLNFIPWGHDPGEIRFTPLSKHVNMDLYMESGLWEIIN TSVTTMEVPIEADTFQLLVLSFSLKRRALFYLMNMILPIAVMGGLNLFVFILPQESGERIGYSITLLLAICVYLTIASDN LPQSSFPSVSLLCAKLFFDMIISSFVLLFTILGLRCYHTDDGVRVPSCLVLLTKCVLCKCCITRERMEEPYVVEHEHEKE RNNTSNRNQTDINKNERRVTWTDVGKASDVVFFCITFLAFTSSHLAYYLFLKFT |
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