Gene
| Gene Model ID | pfu_aug2.0_1015.1_18027 |
|---|---|
| Locus | scaffold1015.1 : 182890 ... 187809 : - |
| To GenomeBrowser | scaffold1015.1:182890..187809 |
| Genes list of scaffold | scaffold1015.1 |
| Synonym | pfu_aug1.0_1333.1_36957 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s ribosomal protein l27a | GO:0003735 GO:0005840 GO:0006412 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1015.1_18027.t1 | 1 | 1 | Ribosomal_L18e | 20 | 145 | 1.9e-37 | 128.5 | 3.09995e-41 | 2.3e-37 | 128.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1015.1_18027.t1 | gi|675874776|ref|XP_009022948.1| | hypothetical protein HELRODRAFT_186501 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_1015.1_18027.t1 | gi|325297037|ref|NP_001191522.1| | ribosomal protein L27a [Aplysia californica] | 0.0 |
| pfu_aug2.0_1015.1_18027.t1 | gi|291230095|ref|XP_002735002.1| | PREDICTED: 60S ribosomal protein L27a-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1015.1_18027.t1 | gi|170573411|ref|XP_001892460.1| | 60S ribosomal protein L27a [Brugia malayi] | 0.0 |
| pfu_aug2.0_1015.1_18027.t1 | gi|312086586|ref|XP_003145135.1| | 60S ribosomal protein L27a [Loa loa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1015.1_18027.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18027.t1 atgactgccaagttaaagaagaccaggaagctgcgtggtcacgtcagtcatggccatggccgtataggtaaacataggaa gcatcctggtggtagaggtaacgctggaggccaacatcaccacaggattaactatgataaataccatcctggttattttg gtaaagttggtatgagatacttccacaagacaaacaacaaattcttctgtcccactgtaaacttagacaaactatggtcg ttagtgtcggaacaaacgagagaaaactataaagataaaaaggacaaggccccagtcatagatgttgtcagagcaggata ctataaagttttaggcaaaggacatttacccaagcagcctgttattgtgaaagcacgattcttcagccattctgccgaaa gaaagataaaatctgcgggaggtgcctgtgtcttagtggcataa |
|
Protein
| Protein ID | pfu_aug2.0_1015.1_18027.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1015.1_18027.t1 MTAKLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINYDKYHPGYFGKVGMRYFHKTNNKFFCPTVNLDKLWS LVSEQTRENYKDKKDKAPVIDVVRAGYYKVLGKGHLPKQPVIVKARFFSHSAERKIKSAGGACVLVA |
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