Gene
| Gene Model ID | pfu_aug2.0_1017.1_24607 |
|---|---|
| Locus | scaffold1017.1 : 5756 ... 14048 : + |
| To GenomeBrowser | scaffold1017.1:5756..14048 |
| Genes list of scaffold | scaffold1017.1 |
| Synonym | pfu_aug1.0_23363.1_11528 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related gtp-binding protein a | GO:0005525 GO:0005634 GO:0005737 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1017.1_24607.t1 | 1 | 1 | Gtr1_RagA | 1 | 223 | 0.0 | 348.0 | 0.0 | 0.0 | 347.6 |
| pfu_aug2.0_1017.1_24607.t1 | 2 | 1 | Ras | 1 | 127 | 3.0e-07 | 29.9 | 2.6e-10 | 6.4e-07 | 28.8 |
| pfu_aug2.0_1017.1_24607.t1 | 1 | 1 | Arf | 6 | 140 | 1.0e-06 | 28.1 | 7.5e-10 | 1.9e-06 | 27.2 |
| pfu_aug2.0_1017.1_24607.t1 | 2 | 2 | Ras | 231 | 231 | 3.0e-07 | 29.9 | 0.87 | 2200.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1017.1_24607.t1 | gi|260796645|ref|XP_002593315.1| | hypothetical protein BRAFLDRAFT_123649 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1017.1_24607.t1 | gi|585707184|ref|XP_006823940.1| | PREDICTED: ras-related GTP-binding protein A-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1017.1_24607.t1 | gi|556967580|ref|XP_005992952.1| | PREDICTED: ras-related GTP-binding protein A-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1017.1_24607.t1 | gi|410915354|ref|XP_003971152.1| | PREDICTED: ras-related GTP-binding protein A [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_1017.1_24607.t1 | gi|573890337|ref|XP_006632930.1| | PREDICTED: ras-related GTP-binding protein A-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1017.1_24607.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1017.1_24607.t1 atggggaagagtgggtcaggaaaaaccagtatgcgttccatcatatttgctaattacattgccagagacacgaggagact tggagcaacaattgatgttgaacattcccacgtcagatttctaggaaacttggtgctcaatctatgggactgtggtggac aagaggcgttcatggagaactactttgccagccagagagacaacatattcaggaacgtagaagtgttgatatatgtgttt gacgttgagagtcgagagttggagaaggacatgcattattaccagtcttgtctggaagccatcttgcagaattctccaga tgctaaggtcttctgtttggtccataaaatggacctggtccaagatgatcaaagagatatgatattcagggagagagagg aagatttacagagattatctaagcccctccattgtacctgctttgctacatctatatgggatgaaactttgtataaggct tggtccagtatagtttatcagctgatccctaacgtacaacaactagaaagtaatttgtccaattttgccagcattattga tgcagatgaagttctcctgtttgaaagagcaacatttttggtaatatcacattgtgagagaaaacaacacagagatgtac acaggtttgagaagataagtaacatcatcaaacagttcaaactgagctgtagtaaactagcggcttcgttccagagtatg gaggtgatgaattcttgttttgctgcttacatagacacgttcacatccaatacatacgttatggtcgtcatgtcagatcc ctcaataccctcagcagcaacactgatcaacataaagaatgcgaagaagcactttgagaaattagagaggatagatcaag gaaattcctccatagctggaaagtaa |
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Protein
| Protein ID | pfu_aug2.0_1017.1_24607.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1017.1_24607.t1 MGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVF DVESRELEKDMHYYQSCLEAILQNSPDAKVFCLVHKMDLVQDDQRDMIFREREEDLQRLSKPLHCTCFATSIWDETLYKA WSSIVYQLIPNVQQLESNLSNFASIIDADEVLLFERATFLVISHCERKQHRDVHRFEKISNIIKQFKLSCSKLAASFQSM EVMNSCFAAYIDTFTSNTYVMVVMSDPSIPSAATLINIKNAKKHFEKLERIDQGNSSIAGK |
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