Gene
| Gene Model ID | pfu_aug2.0_1022.1_08098 |
|---|---|
| Locus | scaffold1022.1 : 80641 ... 92355 : - |
| To GenomeBrowser | scaffold1022.1:80641..92355 |
| Genes list of scaffold | scaffold1022.1 |
| Synonym | pfu_aug1.0_1802.1_51423 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| hmg box-containing protein 4-like isoform x2 | GO:0016589 GO:0044699 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1022.1_08098.t1 | 1 | 1 | HMG_box_2 | 468 | 524 | 7.7e-06 | 26.1 | 3.8e-09 | 2.8e-05 | 24.3 |
| pfu_aug2.0_1022.1_08098.t1 | 1 | 1 | HMG_box | 470 | 528 | 2.5e-12 | 46.8 | 8.3e-16 | 6.2e-12 | 45.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1022.1_08098.t1 | gi|755979102|ref|XP_011308793.1| | PREDICTED: HMG box-containing protein 4-like isoform X2 [Fopius arisanus] | 0.0 |
| pfu_aug2.0_1022.1_08098.t1 | gi|755979099|ref|XP_011308792.1| | PREDICTED: HMG box-containing protein 4-like isoform X1 [Fopius arisanus] | 0.0 |
| pfu_aug2.0_1022.1_08098.t1 | gi|759060504|ref|XP_011339551.1| | PREDICTED: HMG box-containing protein 4 isoform X3 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_1022.1_08098.t1 | gi|759060502|ref|XP_011339550.1| | PREDICTED: HMG box-containing protein 4 isoform X2 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_1022.1_08098.t1 | gi|759060500|ref|XP_011339549.1| | PREDICTED: HMG box-containing protein 4 isoform X1 [Cerapachys biroi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1022.1_08098.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1022.1_08098.t1 atgacatctaaacgaaaatttgttgtagatgatgacgaatactcaccaagcatttcaaaaatagttcagggtgatggaac tgatatgatggctacaccagaacaacccagtaaaagtggcagggtgcggaaaaagtccaccaagttaagggaaatggagg agtttgaggaggcagaacgatccaaatctacaaagaaagccaagattaccccagagacacccaaactaaatcctgttctc catcaagtctctacaggcaaacaaactacaaatactcagcaacaattactacaggcctcaaacattcagatgaacttgat gacagctctcaaaacaacgcctatgttgtctgcccaatcatcacccgaagcttctgttaccttggcaacactagattcaa ataatagtgcaaagaaatttaccaagaaaaagaaagaggacacagcttcagcttcagcttcacagcaatctcagcagtca gacagtaaatccaagccattatcaaggaaaaatgttcttgtggtaccaggactcattcccaactatccaggagtacaaac aatagaagccggtgttattgaacaacaaatgtctattaaagatgaaccaatagaaagtgtcgaccccaacgttctactgc cacaggttgttaaaaatgttaaaagccctacactgatgcatcatctagcagaggacagaattaaaatggaagtcaagtcg ccaccaccgccaaaatcatcgaagaaagggaaaacaaaacaatcacctgctgagcaaggaatgaaggggtcaaggtcacc tcctataagaacagagccgggagagtctgggaaagggagtgtcattaaaatgctactcaataaaccgacacaattctcag acccaaaggtatcgacacaatcgctcaccaagtccacagaatcaggggcttcccctccaaagtctgaaagtaaaggcaag aaagggttgaaagtcaagaaagaactggctccagaaatgctgaaagttgatactggcattgtaaagaaagaagatatagg gatggtgtcacctggagcaagggagacaaccagtggtatgatgtcaccaagcagaatgcagaaactgtcatcccctatga acgatgttgatgatgatgacgatgatgatgatttagatgatgtagatttagatgaagaggatgatttagatcctagtata gatgacagtatggaatgggagtttgagacacaggacggtagccttatcatcgcagaggaaaataacacaactccacaatc aaagaaaaagacaaagaaacccataagtacaaagaaagcaaaaatgaagtcttcaaatattgacacaacacagaatggtt acgccaaatctcctanatgccaaatcttctacacaggtgtgaagaagaagaaaaggttgacagcatacacaatgtggtgt aacagtatgagaaataaggtcctaaatgacaatcctggaatggattttgcccatctgagtagaagacttggggagatttg gcagacagtaccatcaaaagaaaaacagaactggaagagaaaggcgaagagggaagcacggaaacttcttggtaagggac ttctcatccaaactggcaaacaagagacaggagtgacagcggctaagaaagctgagccatcagccaccatcaccacttca ccacctagccatgtgccaccagcggctcagccttcaaccagtcacaatccacctccaataatccatgcccctatcagggg taagggaagtcactccgtcagacagtcggcgtcagtacagagggctatagaggaagcccagcaggccagcaggcaccttg gtatagagccaatagatactgcagcacatctgaagcttgtgggagattctctcagtattataggcatgagactccaggaa cacagaggtctgattgcggtacagggaagtctatcagtgctcctcgactccatgctatgtgcactaggtcctttactctg cttaaccactcaggttccagaattggacggctgccctgcagagacacatgtacggacattagataacattgcatacatca tgccagggttatag |
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Protein
| Protein ID | pfu_aug2.0_1022.1_08098.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1022.1_08098.t1 MTSKRKFVVDDDEYSPSISKIVQGDGTDMMATPEQPSKSGRVRKKSTKLREMEEFEEAERSKSTKKAKITPETPKLNPVL HQVSTGKQTTNTQQQLLQASNIQMNLMTALKTTPMLSAQSSPEASVTLATLDSNNSAKKFTKKKKEDTASASASQQSQQS DSKSKPLSRKNVLVVPGLIPNYPGVQTIEAGVIEQQMSIKDEPIESVDPNVLLPQVVKNVKSPTLMHHLAEDRIKMEVKS PPPPKSSKKGKTKQSPAEQGMKGSRSPPIRTEPGESGKGSVIKMLLNKPTQFSDPKVSTQSLTKSTESGASPPKSESKGK KGLKVKKELAPEMLKVDTGIVKKEDIGMVSPGARETTSGMMSPSRMQKLSSPMNDVDDDDDDDDLDDVDLDEEDDLDPSI DDSMEWEFETQDGSLIIAEENNTTPQSKKKTKKPISTKKAKMKSSNIDTTQNGYAKSPXCQIFYTGVKKKKRLTAYTMWC NSMRNKVLNDNPGMDFAHLSRRLGEIWQTVPSKEKQNWKRKAKREARKLLGKGLLIQTGKQETGVTAAKKAEPSATITTS PPSHVPPAAQPSTSHNPPPIIHAPIRGKGSHSVRQSASVQRAIEEAQQASRHLGIEPIDTAAHLKLVGDSLSIIGMRLQE HRGLIAVQGSLSVLLDSMLCALGPLLCLTTQVPELDGCPAETHVRTLDNIAYIMPGL |
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