Gene
| Gene Model ID | pfu_aug2.0_1022.1_08105 |
|---|---|
| Locus | scaffold1022.1 : 175169 ... 182422 : + |
| To GenomeBrowser | scaffold1022.1:175169..182422 |
| Genes list of scaffold | scaffold1022.1 |
| Synonym | pfu_aug1.0_3313.1_30387 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinol-binding protein 4 | GO:0048513 GO:0065007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1022.1_08105.t1 | 1 | 1 | Lipocalin | 38 | 184 | 5.5e-08 | 32.8 | 1.5e-11 | 7.4e-08 | 32.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1022.1_08105.t1 | gi|556963275|ref|XP_005991620.1| | PREDICTED: retinol-binding protein 4 [Latimeria chalumnae] | 3.0e-16 |
| pfu_aug2.0_1022.1_08105.t1 | gi|507640442|ref|XP_004701400.1| | PREDICTED: retinol-binding protein 4 [Echinops telfairi] | 3.0e-13 |
| pfu_aug2.0_1022.1_08105.t1 | gi|602650857|ref|XP_007431820.1| | PREDICTED: retinol-binding protein 4 isoform X1 [Python bivittatus] | 2.0e-12 |
| pfu_aug2.0_1022.1_08105.t1 | gi|530623506|ref|XP_005301331.1| | PREDICTED: retinol-binding protein 4 [Chrysemys picta bellii] | 2.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_1022.1_08105.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1022.1_08105.t1 atgttgttcctgtatttagtattggcatgtaccctgagtaacgtttatggagtacaggactgcttagtgtctacaataca aactcagccacatttccacgataacaagtttgccggtacgtggtatgagatagagtgggtagctccagtggttgtcaagc ccagcgaattctatgacgattacatccttaatttcacactgctagaaaatggtagctactctgtggctatgaaatttagg gtagaaccagataaaggaacatgtcattcaaaggatggaatatggcagaaaaccgatgagggaaaatacttgtttgtgcg tccctggaaggataggataattcacactccccagtgggtaatatccacggactattctcactatgccgtcatttacggat gtacctctcagaatgatgacggtacctgccggacttacagctccacgctatggagtagggccaggacactgagcagacat ttccagaggaaagcacacaatatattctcaagcgtctgtttggatcctaatgatctgtaccaaacagatcaaaaccatga atgcttatgggtttcaaatgttttgggttaa |
|
Protein
| Protein ID | pfu_aug2.0_1022.1_08105.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1022.1_08105.t1 MLFLYLVLACTLSNVYGVQDCLVSTIQTQPHFHDNKFAGTWYEIEWVAPVVVKPSEFYDDYILNFTLLENGSYSVAMKFR VEPDKGTCHSKDGIWQKTDEGKYLFVRPWKDRIIHTPQWVISTDYSHYAVIYGCTSQNDDGTCRTYSSTLWSRARTLSRH FQRKAHNIFSSVCLDPNDLYQTDQNHECLWVSNVLG |
|