Gene
| Gene Model ID | pfu_aug2.0_1029.1_31371 |
|---|---|
| Locus | scaffold1029.1 : 68596 ... 83724 : + |
| To GenomeBrowser | scaffold1029.1:68596..83724 |
| Genes list of scaffold | scaffold1029.1 |
| Synonym | pfu_aug1.0_15320.1_39683 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1029.1_31371.t2 | 2 | 1 | Ig_2 | 49 | 64 | 2.4e-08 | 33.9 | 1.1 | 2000.0 | -1.1 |
| pfu_aug2.0_1029.1_31371.t2 | 3 | 1 | Collagen | 135 | 191 | 5.9e-19 | 67.3 | 5.6e-12 | 1.0e-08 | 34.5 |
| pfu_aug2.0_1029.1_31371.t2 | 3 | 2 | Collagen | 170 | 227 | 5.9e-19 | 67.3 | 6.0e-10 | 1.1e-06 | 28.0 |
| pfu_aug2.0_1029.1_31371.t2 | 3 | 3 | Collagen | 197 | 251 | 5.9e-19 | 67.3 | 3.2e-11 | 5.9e-08 | 32.1 |
| pfu_aug2.0_1029.1_31371.t2 | 2 | 2 | Ig_2 | 275 | 355 | 2.4e-08 | 33.9 | 5.4e-11 | 1.0e-07 | 31.9 |
| pfu_aug2.0_1029.1_31371.t2 | 1 | 1 | I-set | 278 | 355 | 4.0e-06 | 26.5 | 5.0e-09 | 9.2e-06 | 25.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1029.1_31371.t2 | gi|742081778|ref|XP_010899874.1| | PREDICTED: LOW QUALITY PROTEIN: otolin-1 [Esox lucius] | 6.0e-17 |
| pfu_aug2.0_1029.1_31371.t2 | gi|410903702|ref|XP_003965332.1| | 7.0e-17 | |
| pfu_aug2.0_1029.1_31371.t2 | gi|504155009|ref|XP_004589445.1| | 9.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_1029.1_31371.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1029.1_31371.t1 atggagggggatcaatcccggtctaagatattctctcggctttttaccgtgtttctctgtttccatgtgtctgtgttctt tgccatcacacttcttcagttccggtatacctgggatttagaggtcagactagcagagaggaaggaagctgtactacagc tgagtaagcaatgtaacgctagcaagcaaggtgatctacatggacttgaacagaaaaaggtacgggttcttcgtgccata aaagaactttccaaaaatgacaaggtgtacgaggaaatggccaaggaagtccagacgagacaagatccatcactggcaaa tttactacagagtatgcttcagcaacaagaaagtatgcttgaacaaaagtgttccaaggataccatcatctgtataaaag gtacgaatggattgaagggcgacaaaggtgacaatggaatgaagggtttacctggcagagatggaatgttcggagacgtt ggaggcccggggttacctggtctactcgggcaaaaaggtgtacctggccaaaaaggattgcccgggctgaaaggggattc tggtgaggctggagtggacgcgaatccgggcgtaaagggctcaactggtttgaatggtgtgaagggtgacgcaggtccac gagggttctttggtcccctaggagataaaggtgtggcaggggcagatggtgattatggagaaaacggtgtccaaggtttg aacggcgaaaagggtgggattggagaatctggcttaccgggcgcagcgcctattgtcaataccacgggatgcgactgttt aaaattgccggagttcatcaacaactcctcggagactagaactgtcccactaggcagcaagatatcagatatatgtttgg cgacagggaagcccacgccaactcttacagtgtataaaaaagactcggtcggctgcttccaaaacggaacatcaagtgtt ggaaatataacaaactttattgacaggttttctcccaccgatgctggaacgtatacatgcgaagccaaaaactcactggg cactgtatacaaagacgtaacgctgtcttctagaaatccacagtcaacatgtaactttgacgatgggagtttgagtaagt gtaggtggacgcagactacggatgatcgttttgacttcctgttcagaagcattcaaacaccgtccagtgataccggtccc agcgctgaccatacacatgcaaactctaacggacaatacatatttttggagtcgtctaaccccgcccaggtgggtgacag tgctggtatcaagtctgatcttctcccggcgggaagtcccgtatgtatagacttctggtacaacatgtacggcacggaaa tgggagatcttaatgtatttgtactgcacgggacaaagaaatcgacggtgttgaccaagtctggtgatcagggatcaagc tggcatagttaccgtgtgacgatccctcttcagaccacgccctttaccgtacacatagcaggtacccgtgggagtggtta ctacagcgatatggccatagacgatgtcaggatagatgagggacggtgctga |
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| Transcript ID | pfu_aug2.0_1029.1_31371.t2 |
| Definition | - |
>pfu_aug2.0_1029.1_31371.t2 atggagggggatcaatcccggtctaagatattctctcggctttttaccgtgtttctctgtttccatgtgtctgtgttctt tgccatcacacttcttcagttccggtatacctgggatttagaggtcagactagcagagaggaaggaagctgtactacagc tgagtaagcaatgtaacgctagcaagcaaggtgatctacatggacttgaacagaaaaaggtacgggttcttcgtgccata aaagaactttccaaaaatgacaaggtgtacgaggaaatggccaaggaagtccagacgagacaagatccatcactggcaaa tttactacagagtatgcttcagcaacaagaaagtatgcttgaacaaaagtgttccaaggataccatcatctgtataaaag gtacgaatggattgaagggcgacaaaggtgacaatggaatgaagggtttacctggcagagatggaatgttcggagacgtt ggaggcccggggttacctggtctactcgggcaaaaaggtgtacctggccaaaaaggattgcccgggctgaaaggggattc tggtgaggctggagtggacgcgaatccgggcgtaaagggctcaactggtttgaatggtgtgaagggtgacgcaggtccac gagggttctttggtcccctaggagataaaggtgtggcaggggcagatggtgattatggagaaaacggtgtccaaggtttg aacggcgaaaagggtgggattggagaatctggcttaccgggcgcagcgcctattgtcaataccacgggatgcgactgttt aaaattgccggagttcatcaacaactcctcggagactagaactgtcccactaggcagcaagatatcagatatatgtttgg cgacagggaagcccacgccaactcttacagtgtataaaaaagactcggtcggctgcttccaaaacggaacatcaagtgtt ggaaatataacaaactttattgacaggttttctcccaccgatgctggaacgtatacatgcgaagccaaaaactcactggg cactgtatacaaagacgtaacgctgtcttctagaagtaagatcgtttgtatataa |
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Protein
| Protein ID | pfu_aug2.0_1029.1_31371.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1029.1_31371.t1 MEGDQSRSKIFSRLFTVFLCFHVSVFFAITLLQFRYTWDLEVRLAERKEAVLQLSKQCNASKQGDLHGLEQKKVRVLRAI KELSKNDKVYEEMAKEVQTRQDPSLANLLQSMLQQQESMLEQKCSKDTIICIKGTNGLKGDKGDNGMKGLPGRDGMFGDV GGPGLPGLLGQKGVPGQKGLPGLKGDSGEAGVDANPGVKGSTGLNGVKGDAGPRGFFGPLGDKGVAGADGDYGENGVQGL NGEKGGIGESGLPGAAPIVNTTGCDCLKLPEFINNSSETRTVPLGSKISDICLATGKPTPTLTVYKKDSVGCFQNGTSSV GNITNFIDRFSPTDAGTYTCEAKNSLGTVYKDVTLSSRNPQSTCNFDDGSLSKCRWTQTTDDRFDFLFRSIQTPSSDTGP SADHTHANSNGQYIFLESSNPAQVGDSAGIKSDLLPAGSPVCIDFWYNMYGTEMGDLNVFVLHGTKKSTVLTKSGDQGSS WHSYRVTIPLQTTPFTVHIAGTRGSGYYSDMAIDDVRIDEGRC |
|
| Protein ID | pfu_aug2.0_1029.1_31371.t2 |
| Definition | - |
>pfu_aug2.0_1029.1_31371.t2 MEGDQSRSKIFSRLFTVFLCFHVSVFFAITLLQFRYTWDLEVRLAERKEAVLQLSKQCNASKQGDLHGLEQKKVRVLRAI KELSKNDKVYEEMAKEVQTRQDPSLANLLQSMLQQQESMLEQKCSKDTIICIKGTNGLKGDKGDNGMKGLPGRDGMFGDV GGPGLPGLLGQKGVPGQKGLPGLKGDSGEAGVDANPGVKGSTGLNGVKGDAGPRGFFGPLGDKGVAGADGDYGENGVQGL NGEKGGIGESGLPGAAPIVNTTGCDCLKLPEFINNSSETRTVPLGSKISDICLATGKPTPTLTVYKKDSVGCFQNGTSSV GNITNFIDRFSPTDAGTYTCEAKNSLGTVYKDVTLSSRSKIVCI |
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