Gene
| Gene Model ID | pfu_aug2.0_103.1_10269 |
|---|---|
| Locus | scaffold103.1 : 380184 ... 382611 : - |
| To GenomeBrowser | scaffold103.1:380184..382611 |
| Genes list of scaffold | scaffold103.1 |
| Synonym | pfu_aug1.0_19.1_57916 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| electroneutral sodium bicarbonate exchanger 1- partial | GO:0006820 GO:0008509 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_103.1_10269.t1 | 1 | 1 | HCO3_cotransp | 1 | 55 | 1.7e-22 | 79.8 | 1.4e-26 | 2.1e-22 | 79.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_103.1_10269.t1 | gi|684409839|ref|XP_009175878.1| | hypothetical protein T265_11066 [Opisthorchis viverrini] | 3.00018e-42 |
| pfu_aug2.0_103.1_10269.t1 | gi|524912487|ref|XP_005111091.1| | PREDICTED: sodium bicarbonate cotransporter 3-like [Aplysia californica] | 3.99931e-42 |
| pfu_aug2.0_103.1_10269.t1 | gi|755891504|ref|XP_011294936.1| | PREDICTED: electroneutral sodium bicarbonate exchanger 1 [Musca domestica] | 4.00001e-41 |
| pfu_aug2.0_103.1_10269.t1 | gi|755893888|ref|XP_011295270.1| | PREDICTED: electroneutral sodium bicarbonate exchanger 1-like, partial [Musca domestica] | 3.0e-40 |
| pfu_aug2.0_103.1_10269.t1 | gi|719730684|ref|XP_010209582.1| | PREDICTED: electroneutral sodium bicarbonate exchanger 1-like, partial [Tinamus guttatus] | 6.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_103.1_10269.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_103.1_10269.t1 atgcctgtactgtacggggtatttttctacatgggtgtgtcggcccttaggggaatgcagctgatgcagagactatccat attattcatgcctcagaagcaccaaccagattacatctacttacgtcatgtgccaattcccagggtgcacatgttcacat taatacaattcgtgtgtctggtgggattatggctcataaagagcttttctgaaacatccatgttcttcccgttactggta ttagccatgtgttttgtcaggaagggtttggatctggtttacacccagtacgagttgctgtggattgatgacttattacc aggagcaatggtggaaaatcatagcgattacccgccaactccaagaaacagcatcaggaaacccaaaccttacaggtctt tgtctgtaccggcctatgccgacaaacaaccctctcccgtccggcagagaaaacacatccctcctgtccaccataaaact agtcttccattcctcaacagaagtttgtctcatgaggcggctgagagaaaggcgtctctgtatgaagcgtttgggcctct ttctgagcgcaaagtgtcgctgatgtcacttccgaccacgcccacttacgtcatagaaggcgatgccgaatcaggactga ggagtagatactgcactgataagtgtagcactctgcattaa |
|
Protein
| Protein ID | pfu_aug2.0_103.1_10269.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_103.1_10269.t1 MPVLYGVFFYMGVSALRGMQLMQRLSILFMPQKHQPDYIYLRHVPIPRVHMFTLIQFVCLVGLWLIKSFSETSMFFPLLV LAMCFVRKGLDLVYTQYELLWIDDLLPGAMVENHSDYPPTPRNSIRKPKPYRSLSVPAYADKQPSPVRQRKHIPPVHHKT SLPFLNRSLSHEAAERKASLYEAFGPLSERKVSLMSLPTTPTYVIEGDAESGLRSRYCTDKCSTLH |
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