Gene
| Gene Model ID | pfu_aug2.0_103.1_10273 |
|---|---|
| Locus | scaffold103.1 : 439841 ... 455181 : - |
| To GenomeBrowser | scaffold103.1:439841..455181 |
| Genes list of scaffold | scaffold103.1 |
| Synonym | pfu_aug1.0_19.1_57912 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_103.1_10273.t1 | 4 | 1 | TNFR_c6 | 44 | 67 | 1.6e-21 | 76.0 | 2.8e-09 | 2.1e-05 | 24.4 |
| pfu_aug2.0_103.1_10273.t1 | 4 | 2 | TNFR_c6 | 70 | 109 | 1.6e-21 | 76.0 | 5.2e-08 | 0.00039 | 20.4 |
| pfu_aug2.0_103.1_10273.t1 | 4 | 3 | TNFR_c6 | 111 | 148 | 1.6e-21 | 76.0 | 4.6e-05 | 0.34 | 11.0 |
| pfu_aug2.0_103.1_10273.t1 | 4 | 4 | TNFR_c6 | 151 | 190 | 1.6e-21 | 76.0 | 9.4e-14 | 7.0e-10 | 38.8 |
| pfu_aug2.0_103.1_10273.t1 | 1 | 1 | Death | 308 | 382 | 2.7e-13 | 49.4 | 6.8e-17 | 5.0e-13 | 48.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_103.1_10273.t1 | gi|269784947|ref|NP_001161625.1| | p75 neurotrophin receptor-like protein precursor [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_103.1_10273.t1 | gi|602656977|ref|XP_007434214.1| | PREDICTED: tumor necrosis factor receptor superfamily member 16-like [Python bivittatus] | 0.0 |
| pfu_aug2.0_103.1_10273.t1 | gi|47499200|gb|AAT28373.1| | NRH [Xenopus laevis] | 0.0 |
| pfu_aug2.0_103.1_10273.t1 | gi|80476426|gb|AAI08562.1| | LOC432338 protein [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_103.1_10273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_103.1_10273.t1 atgatgagaggggttacgatgaaaatttggatacaggttgcaacaaatatacttgtcgtgattgcagtttctgctatagt gtacgaggaatgtggctctgaggaaaaagacgcaaattctagtggcgtcagatgttgtaagatgtgtaacccaggagaag gcgtcatacagcgctgcaccaatgacacggacacagtttgcgcctcgtgtgcgcgaggttcgttttcgccgaacgtaccg cattctgaaacgtgtaaaacatgcagaaaatgtggaaagaatgcaattttggaggaatcctgttcatcaactcaggacac aatatgtaaatgcaagttcaactattatttatcaccggaaactggtttttgtgcgctatgcaatctttgtccgatagcag ttggcgcaaaggtgcgatgcgccggccatacaaactccgaatgtgaagagtgcgccgatggatatttttcagatgtgcga agcgccatttctccatgtaagccatgtactatgtgcaaaccaaaacagtttatgctacagaattgtacaagggatcaaga cactatttgtttagatttcagattgggcattacagattccccgcgggccgggtcccaaaacaacaacattccaaatcaaa aagacgatgacgacaactttgacgtcataccgatctactgttcagttctcggcgcagtggtcgccggtttgctggtgtat gttatttttaaacactacactcgtttaaaaaacaagaaacatcacaaagtttcggaccctcatgctgacattgagtactc taaggcgtcgggtggcgatagtggcgtatttgtggagacagatgtacattcaaaagcatataaccaattaaccaaggtgc gagatctgcccataatcaagaagaaatctctgtcgcatatgctagcattcaatcagaggaatagagacgattggaaagct ttggctaacttatttggttacacatgcggacaaatagaaagatttgaagtagatcgtaatgaccaagaacaaaatgctca acgtttgttagatgattggtctagacgaaaacatgccacggtgggcgtccttgttaagggccttagtgatataggaagac tggacgcagcaagattccttctttctgatatgcaaaaggacgtcaaatccaaacctgaatataaatccaaaccggaccat aaagttgtgcatgtcgtataa |
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Protein
| Protein ID | pfu_aug2.0_103.1_10273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_103.1_10273.t1 MMRGVTMKIWIQVATNILVVIAVSAIVYEECGSEEKDANSSGVRCCKMCNPGEGVIQRCTNDTDTVCASCARGSFSPNVP HSETCKTCRKCGKNAILEESCSSTQDTICKCKFNYYLSPETGFCALCNLCPIAVGAKVRCAGHTNSECEECADGYFSDVR SAISPCKPCTMCKPKQFMLQNCTRDQDTICLDFRLGITDSPRAGSQNNNIPNQKDDDDNFDVIPIYCSVLGAVVAGLLVY VIFKHYTRLKNKKHHKVSDPHADIEYSKASGGDSGVFVETDVHSKAYNQLTKVRDLPIIKKKSLSHMLAFNQRNRDDWKA LANLFGYTCGQIERFEVDRNDQEQNAQRLLDDWSRRKHATVGVLVKGLSDIGRLDAARFLLSDMQKDVKSKPEYKSKPDH KVVHVV |
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