Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1032.1_08114
Locus scaffold1032.1 : 152091 ... 170025 : -
To GenomeBrowser scaffold1032.1:152091..170025
Genes list of scaffold scaffold1032.1
Synonym pfu_aug1.0_22743.1_69512

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1032.1_08114.t1 1 1 COesterase 16 565 0.0 408.0 0.0 0.0 407.0
pfu_aug2.0_1032.1_08114.t1 1 1 Abhydrolase_3 151 238 2.5e-07 30.5 2.1e-10 1.1e-06 28.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1032.1_08114.t1 gi|585643191|ref|XP_006811307.1| PREDICTED: neuroligin-4, Y-linked-like [Saccoglossus kowalevskii] 0.0
pfu_aug2.0_1032.1_08114.t1 gi|657555956|ref|XP_008282318.1| PREDICTED: neuroligin-4, X-linked isoform X2 [Stegastes partitus] 0.0

Transcript
Transcript IDpfu_aug2.0_1032.1_08114.t1
Definition-
>pfu_aug2.0_1032.1_08114.t1
atggctcttttctcggcaattcaacagggtctttttattatttgtactgcatgctttctgtttcatgcttttgtggaggg
ctatgcgagcaatgtactcgtaaacacaagagatggtcctgtggacggcttctccattacttcccattattcagcgtata
acaagaagcgaataaatgtatttcttggcataccatatgctaaaagattcagccaatttaatgatcctaaaagagagttc
cgatttaagaaaccagagagaccatcatggaatggtatatgggacgcttcctactacagaccagcctgtcctcagcctgt
gtggtacatcagggaaaccgtaccaaatttttcagccgctaatattagtgaagactgcctctaccttaacatctttgtac
caaatcgtacagatgatttgaacagtaacagccccagtcttcaccctgtcatggtgtttttccacggtgggggattcaca
atgggatctgcacaacaatacccaggagttttcctggcagagagagatatattggtggtaacagtcaactacagacttgg
agctctgggattcctgagtacaggcgatcttaactcacccggtaattatgggatgtgggaccagctaagggcattagaat
ggatctgggaaaatatacaaactttccgagggaacccacaaatcatcaccatatttggtcagagtacaggagccgctagt
gtaggcttacatctgctgtctccaagatcaataaacttatttcatcgagccatcatgcagagtggttcggacagaagcga
atgggcggtgataacgaagcagtcagatgcaaaggattatgctcgtgagttgggcagagaaatcggatgtccgacaggag
atatgtttagactggtacagtgtctacaactgtacaggacagatatggagattgttaacgcctctactaagatcaggctg
aagagtggctctgttggtaatccctgggggccagtaattgatggaccgattgtaggggcagattatgcttttctccctga
ttcacccagaaccatgagggagcaagctagattcaagaaaatcgtcgtcatgggcgggctaaacaaagatgacggatctt
tctttattccaaatctaccaactctggaggacggcatctcatctacccaatttacgaacattctgtatgaattcctgagg
gatcggaagaaagaggatactgacatggtcaacacaaacgacgctctcaatttccagtatacatggtggccgcaacctaa
aaatatcacaatgactcgtcaaatggtttcagatttcgtagttaggatacagactttgctagaaaaggccactatgaaat
tagaaaaaaatccttttgattgtcaaggaatagcacatggtcaagagcttcagtatgtgtttggatatccctacataaat
cagacgtatatgaacatattcggcgtgtatccacgacagagatatgactatgcggacagaaacatgagtgaatacatgat
cagtctatggaccaacttctctgcttttggtgaccccactcctcggatatttgacttgaagtacttcaagaatgtcacat
ggagagaacacaatctattcaaccatagctttttccacatcagtaattcgtcatcgaaccagaccaattatagacagcaa
tattacggcttctggcgctcatatttccccctgatattcagcaaacctatttggtccaatgttaaagctcagactcctta
ccttctcatgataatcatgaaaccacaaattttatttggtttgtatatcaggtcgagcacaaatttcgaatatatgaaaa
agaaaatattgtaa

Protein
Protein IDpfu_aug2.0_1032.1_08114.t1
Definition-
>pfu_aug2.0_1032.1_08114.t1
MALFSAIQQGLFIICTACFLFHAFVEGYASNVLVNTRDGPVDGFSITSHYSAYNKKRINVFLGIPYAKRFSQFNDPKREF
RFKKPERPSWNGIWDASYYRPACPQPVWYIRETVPNFSAANISEDCLYLNIFVPNRTDDLNSNSPSLHPVMVFFHGGGFT
MGSAQQYPGVFLAERDILVVTVNYRLGALGFLSTGDLNSPGNYGMWDQLRALEWIWENIQTFRGNPQIITIFGQSTGAAS
VGLHLLSPRSINLFHRAIMQSGSDRSEWAVITKQSDAKDYARELGREIGCPTGDMFRLVQCLQLYRTDMEIVNASTKIRL
KSGSVGNPWGPVIDGPIVGADYAFLPDSPRTMREQARFKKIVVMGGLNKDDGSFFIPNLPTLEDGISSTQFTNILYEFLR
DRKKEDTDMVNTNDALNFQYTWWPQPKNITMTRQMVSDFVVRIQTLLEKATMKLEKNPFDCQGIAHGQELQYVFGYPYIN
QTYMNIFGVYPRQRYDYADRNMSEYMISLWTNFSAFGDPTPRIFDLKYFKNVTWREHNLFNHSFFHISNSSSNQTNYRQQ
YYGFWRSYFPLIFSKPIWSNVKAQTPYLLMIIMKPQILFGLYIRSSTNFEYMKKKIL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495