Gene
| Gene Model ID | pfu_aug2.0_1046.1_21370 |
|---|---|
| Locus | scaffold1046.1 : 127446 ... 154460 : + |
| To GenomeBrowser | scaffold1046.1:127446..154460 |
| Genes list of scaffold | scaffold1046.1 |
| Synonym | pfu_aug1.0_6132.1_23956 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1046.1_21370.t1 | 4 | 1 | EGF | 36 | 56 | 3.8e-11 | 42.7 | 2.2e-05 | 0.054 | 13.4 |
| pfu_aug2.0_1046.1_21370.t1 | 4 | 2 | EGF | 166 | 195 | 3.8e-11 | 42.7 | 4.0e-05 | 0.098 | 12.6 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 1 | Laminin_G_2 | 232 | 359 | 0.0 | 270.4 | 1.2e-23 | 3.0e-20 | 72.5 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 1 | Laminin_G_1 | 233 | 362 | 0.0 | 251.1 | 1.0e-22 | 2.5e-19 | 69.5 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 1 | Laminin_G_3 | 243 | 358 | 6.0e-09 | 36.3 | 0.0042 | 10.0 | 6.2 |
| pfu_aug2.0_1046.1_21370.t1 | 4 | 3 | EGF | 382 | 417 | 3.8e-11 | 42.7 | 1.2e-05 | 0.03 | 14.3 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 2 | Laminin_G_3 | 449 | 585 | 6.0e-09 | 36.3 | 2.9e-05 | 0.071 | 13.3 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 2 | Laminin_G_2 | 455 | 582 | 0.0 | 270.4 | 4.2e-29 | 1.0e-25 | 90.2 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 2 | Laminin_G_1 | 455 | 586 | 0.0 | 251.1 | 2.2e-28 | 5.4e-25 | 87.9 |
| pfu_aug2.0_1046.1_21370.t1 | 4 | 4 | EGF | 604 | 634 | 3.8e-11 | 42.7 | 1.6e-07 | 0.0004 | 20.2 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 3 | Laminin_G_3 | 650 | 802 | 6.0e-09 | 36.3 | 1.2e-05 | 0.029 | 14.6 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 3 | Laminin_G_2 | 676 | 804 | 0.0 | 270.4 | 4.6e-34 | 1.1e-30 | 106.2 |
| pfu_aug2.0_1046.1_21370.t1 | 3 | 3 | Laminin_G_1 | 676 | 805 | 0.0 | 251.1 | 4.2e-29 | 1.0e-25 | 90.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1046.1_21370.t1 | gi|676429826|ref|XP_009045727.1| | hypothetical protein LOTGIDRAFT_224298 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1046.1_21370.t1 | gi|525026201|ref|XP_005060552.1| | PREDICTED: pikachurin isoform X1 [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_1046.1_21370.t1 | gi|683928316|ref|XP_009094123.1| | PREDICTED: pikachurin [Serinus canaria] | 0.0 |
| pfu_aug2.0_1046.1_21370.t1 | gi|543734152|ref|XP_005508078.1| | PREDICTED: pikachurin [Columba livia] | 0.0 |
| pfu_aug2.0_1046.1_21370.t1 | gi|663259869|ref|XP_008491685.1| | PREDICTED: pikachurin [Calypte anna] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1046.1_21370.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1046.1_21370.t1 atggcggtttacgcacgcttactatgtttgtatttttttgcgctgatttttgcttttgtgaatggatttgatagcaacat agcttttttcgatggaaagtgtttttgtcagcatgaatgtattcacatagacaacggctttatatgtagatgtcaccaag ggtatcacctagcgggagatggtttctcatgtatagaggatttgatccaacacgacaagcaaccatcaaaccagaaaatt tcattaaaaccttccatcagttcatcacaaactgttagtcgaaaagtagttcatggacagtcagaaacagagagtctttc aaattttagaagtccgaaaacaggagattccagtaaaatttcagcaaattctgattccatccacagacatccggttgtga aacttgcaaatttaaattctgcctattattccgatgatgcatcagtagattcgcgccaaaaattggaagcgttgtcactg attcaacatccaacatgccttgatactggttgtgaaaataatggtacctgcatatcacaaggttcccggtcaaaatgcaa ctgccctctggggacaggtggtaaaacttgccaaaaagatatacatgtgaagtatccaaagtttcatggtgatgggtacc ttgctttaccagtactgagacacgcccacaaagaatttgacatactaatagaattcaaaccacgtgattggaatggcctc ctgctgtatacggccgaaagggaggaggggaagggagactacttctctatagctttagtcaacggatttatagtttatag atttgactgtgggaccggacatgcaaccatcagaagcgttaaccgagtacagcttgacaaatggaactgggttcgagtat ctcgaaaggataatttgggatctttatggcttaatgatgtcggaccatcaactggatactcacagggagcttattccagg ataaccatcagacttgaattgtaccttggcgggttcttcaacatttccggaatatctcggcgaacggggacatcaaaggg ttttataggatgtatccaaaccctgaaaataaacaactataagtatgacctgcgcagtactgaaaataatggagaagcac agcatggtgttaatataggagagtgcagtgaagacgtatgtaaaggagtgctctgtcaaaatggaggtacatgcgtccct aagtcagctgatatccatatgtgtctctgcccacttggttcgtcaggcaaccattgccaagaaggaaaggaagtccatat cccaaaatttagcggattttcacatctccggcatcctggtttggggcgaagcagcttgtcttacactcagatagagatgg tgtttaagcccacccatcctgagggggttatattgtataatggctacaccactgaccggaagggggactacatatcgtta gccatgaggggacgacatttagaattccaatttgatctgggcaccggtccaggggtcataaagagttttgagccgctggt cttggaccaatggcactgggtacaggtctcccgtactgggatgcagggggtgatggaaatagacaaacaacatcgcgtgg aggggctgtcccaaggggcgttcacccagctgaccctcactcaggatctccttattggtggacatcacaactttgacgaa acgtccaaactggccaatctgacgtcatcatttcaaggatgcattcagagtataattatcaacgacaaagaactagactt ggtagacgatgcagactttggggtgaacatagagccttgtgaccacccatgtgccggggatccatgtttgaactctgggc agtgtcttcccgacaaggagttttatacttgttcatgcccattgggctttggaggttcaaattgtcaaaacgaaatacgg gagcctgttcgtgtaccatcctttaacggacatggttatctagtgtattcagatgatgatgttggaaaaaggctatctgg acccgtcactgatatccagatgagatttcggaccactagtcccgcgggattgttgttttggaccggtcaaaatacgtccg tctcggccccctcggactttttggcccttggttttactgatggagctctacagttcagatataacctgggtggcggtgag gtcgttatttcttacaacgggagtaatttagtggacggacagtggcatagcatacgagctcagagagacaagcaggatgg gtatcttgaagttgatcacagatggattgtggaaggaagctccccggggaaattttctgtactaaacaccaacaaagaac tttatttaggtggtgctctggatacatctttactgacatttggaaaattcttaactggttttgctggatgtataagtgat gtaaaattggcggaggaatacaacataaacttggtgaaaggtgctcactccggaagaaatattcagtcatgtgacatcac gtaa |
|
Protein
| Protein ID | pfu_aug2.0_1046.1_21370.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1046.1_21370.t1 MAVYARLLCLYFFALIFAFVNGFDSNIAFFDGKCFCQHECIHIDNGFICRCHQGYHLAGDGFSCIEDLIQHDKQPSNQKI SLKPSISSSQTVSRKVVHGQSETESLSNFRSPKTGDSSKISANSDSIHRHPVVKLANLNSAYYSDDASVDSRQKLEALSL IQHPTCLDTGCENNGTCISQGSRSKCNCPLGTGGKTCQKDIHVKYPKFHGDGYLALPVLRHAHKEFDILIEFKPRDWNGL LLYTAEREEGKGDYFSIALVNGFIVYRFDCGTGHATIRSVNRVQLDKWNWVRVSRKDNLGSLWLNDVGPSTGYSQGAYSR ITIRLELYLGGFFNISGISRRTGTSKGFIGCIQTLKINNYKYDLRSTENNGEAQHGVNIGECSEDVCKGVLCQNGGTCVP KSADIHMCLCPLGSSGNHCQEGKEVHIPKFSGFSHLRHPGLGRSSLSYTQIEMVFKPTHPEGVILYNGYTTDRKGDYISL AMRGRHLEFQFDLGTGPGVIKSFEPLVLDQWHWVQVSRTGMQGVMEIDKQHRVEGLSQGAFTQLTLTQDLLIGGHHNFDE TSKLANLTSSFQGCIQSIIINDKELDLVDDADFGVNIEPCDHPCAGDPCLNSGQCLPDKEFYTCSCPLGFGGSNCQNEIR EPVRVPSFNGHGYLVYSDDDVGKRLSGPVTDIQMRFRTTSPAGLLFWTGQNTSVSAPSDFLALGFTDGALQFRYNLGGGE VVISYNGSNLVDGQWHSIRAQRDKQDGYLEVDHRWIVEGSSPGKFSVLNTNKELYLGGALDTSLLTFGKFLTGFAGCISD VKLAEEYNINLVKGAHSGRNIQSCDIT |
|