Gene
| Gene Model ID | pfu_aug2.0_1046.1_21373 |
|---|---|
| Locus | scaffold1046.1 : 174987 ... 187425 : - |
| To GenomeBrowser | scaffold1046.1:174987..187425 |
| Genes list of scaffold | scaffold1046.1 |
| Synonym | pfu_aug1.0_27822.1_47859 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription elongation factor s-ii | GO:0003677 GO:0003746 GO:0005654 GO:0005730 GO:0006414 GO:0008270 GO:0030218 GO:0032784 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1046.1_21373.t1 | 1 | 1 | Med26 | 30 | 81 | 4.5e-17 | 61.2 | 4.6e-20 | 1.1e-16 | 59.9 |
| pfu_aug2.0_1046.1_21373.t1 | 1 | 1 | TFIIS_M | 73 | 180 | 3.1e-35 | 120.6 | 2.2e-38 | 5.3e-35 | 119.9 |
| pfu_aug2.0_1046.1_21373.t1 | 1 | 1 | TFIIS_C | 191 | 229 | 1.6e-18 | 66.0 | 1.2e-21 | 2.9e-18 | 65.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1046.1_21373.t1 | gi|391331678|ref|XP_003740270.1| | PREDICTED: transcription elongation factor S-II-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_1046.1_21373.t1 | gi|602643638|ref|XP_007428277.1| | PREDICTED: transcription elongation factor A protein 1 isoform X3 [Python bivittatus] | 0.0 |
| pfu_aug2.0_1046.1_21373.t1 | gi|655851243|ref|XP_008264020.1| | PREDICTED: transcription elongation factor A protein 3 [Oryctolagus cuniculus] | 0.0 |
| pfu_aug2.0_1046.1_21373.t1 | gi|524901269|ref|XP_005107045.1| | PREDICTED: transcription elongation factor S-II-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1046.1_21373.t1 | gi|524901267|ref|XP_005107044.1| | PREDICTED: transcription elongation factor S-II-like isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1046.1_21373.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1046.1_21373.t1 atgacatgcgaggaagacgtgttgaagataggaaagaagttagaaaagatgatttccagcaacagcgccgaccatggagg agcagaagatttattgaagaaactacaagaccttccaatgacactagctgtattacagaaaaccagaattggaatgacag taaataatttccgaaaagcatccagcaaagatgaagtcattgtattagccaaaggattgattaaaagctggaaaaaatta ttacctgcagattcaggagaggaagtagaaggtgccggaactccagaagatataggtcccaaagtagaagatgcaattta tgcagaatttaagaatacagattcaaagtacaagaatcgggtcagaagtaggatagccaatctgaaggacaagaaaaatc ccaaattacgagagcatgtattattaggtctgatatcaccagaaaggatggcgtcaatgacagctgaggaaatggcgagt gatgccttgaaagaattgcgtgccaagttaacgaaagaagctattaatgaccatcagatggccaaaaatgaaggaacgac aacagatctctttaaatgtgggaagtgtggaaagcataattgtacctacaatcagctacaaacaagaagttctgatgaac ctatgacgacgtttgttttctgtaatgaatgtggaaatagatggaagttttgttaa |
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Protein
| Protein ID | pfu_aug2.0_1046.1_21373.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1046.1_21373.t1 MTCEEDVLKIGKKLEKMISSNSADHGGAEDLLKKLQDLPMTLAVLQKTRIGMTVNNFRKASSKDEVIVLAKGLIKSWKKL LPADSGEEVEGAGTPEDIGPKVEDAIYAEFKNTDSKYKNRVRSRIANLKDKKNPKLREHVLLGLISPERMASMTAEEMAS DALKELRAKLTKEAINDHQMAKNEGTTTDLFKCGKCGKHNCTYNQLQTRSSDEPMTTFVFCNECGNRWKFC |
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