Gene
| Gene Model ID | pfu_aug2.0_105.1_16925 |
|---|---|
| Locus | scaffold105.1 : 243633 ... 275827 : + |
| To GenomeBrowser | scaffold105.1:243633..275827 |
| Genes list of scaffold | scaffold105.1 |
| Synonym | pfu_aug1.0_5349.1_59760 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_105.1_16925.t1 | 1 | 1 | RVT_1 | 7 | 124 | 2.2e-20 | 72.9 | 7.4e-24 | 3.7e-20 | 72.2 |
| pfu_aug2.0_105.1_16925.t1 | 1 | 1 | DTW | 123 | 274 | 3.9e-24 | 84.9 | 1.3e-27 | 6.4e-24 | 84.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_105.1_16925.t1 | gi|676458101|ref|XP_009054866.1| | hypothetical protein LOTGIDRAFT_118026, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_105.1_16925.t1 | gi|573877521|ref|XP_006627007.1| | PREDICTED: DTW domain-containing protein 2-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_105.1_16925.t1 | gi|524907681|ref|XP_005108956.1| | PREDICTED: DTW domain-containing protein 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_105.1_16925.t1 | gi|706119449|ref|XP_010195804.1| | PREDICTED: DTW domain-containing protein 2 [Colius striatus] | 0.0 |
| pfu_aug2.0_105.1_16925.t1 | gi|698430227|ref|XP_009815217.1| | PREDICTED: DTW domain-containing protein 2, partial [Gavia stellata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_105.1_16925.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_105.1_16925.t1 atgaaggaatttaatttggttgccaaactacaccactatggcgtatgcggcaacctgctaaactggatccggagcttctt atctggacgcacacggcgcgtattggtagaaggccattcctcttcaaccacaccagtcacttctggggtgccacaaggaa cggtcctcggtcctctgttatttctggcatacattaacgacctacccggtaaagttaagtcaactgccagactttttgct gatgactgcttattgtacagaacaataaaaacagaggacgatgccaaacagctccaggatgacctgaacaatctccagca ttgggaatcagactggctgatgcacttcaacccagacaaatgtaaggaatccagaaatttgcgtacggcaccgatgttaa tggagagtttaccgcctgggaagtgtcacatcatcaaaggaaaaaagtttccacaacataggtacacagaactagctagt attctccaggaccccatgactttattactgtatcctgacccagaggcagtcaacataacagatttccctctaccaagggg tgataactcctacaatttggtgttgttggatggaacatgggctcaagccaagaatatgtaccttagtaatgacatattca agttgccacaaaaggtgagaattgagcacagttctaaaagtaaatatgtgataagaacccagcctgatgatggctcctta tcgacactggaatgtgctgccgtggccttgtctgtcctggaaggtcaaccgtcttatatacagattttgacacggcccct ggaggccctctgtgattttcagatccagtatggagcatgtaaacatgacagtaaagtattcaaaattgaaaatggattgt ggcataaacgcttaccaagaaaacttttaaaacgcatggaggaaaaaaagaaacaagataattcacctcattcagataag gaatacatggatgaagaactgtgtgtggatcctgttactaataaaactttatataatgatgaagaacaatgtaagcataa cttaagtaaaaactctgaggatgaaatactgcataaaaactcctag |
|
Protein
| Protein ID | pfu_aug2.0_105.1_16925.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_105.1_16925.t1 MKEFNLVAKLHHYGVCGNLLNWIRSFLSGRTRRVLVEGHSSSTTPVTSGVPQGTVLGPLLFLAYINDLPGKVKSTARLFA DDCLLYRTIKTEDDAKQLQDDLNNLQHWESDWLMHFNPDKCKESRNLRTAPMLMESLPPGKCHIIKGKKFPQHRYTELAS ILQDPMTLLLYPDPEAVNITDFPLPRGDNSYNLVLLDGTWAQAKNMYLSNDIFKLPQKVRIEHSSKSKYVIRTQPDDGSL STLECAAVALSVLEGQPSYIQILTRPLEALCDFQIQYGACKHDSKVFKIENGLWHKRLPRKLLKRMEEKKKQDNSPHSDK EYMDEELCVDPVTNKTLYNDEEQCKHNLSKNSEDEILHKNS |
|