Gene
| Gene Model ID | pfu_aug2.0_105.1_16928 |
|---|---|
| Locus | scaffold105.1 : 345493 ... 360813 : + |
| To GenomeBrowser | scaffold105.1:345493..360813 |
| Genes list of scaffold | scaffold105.1 |
| Synonym | pfu_aug1.0_16920.1_69024 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_105.1_16928.t1 | 2 | 1 | RGM_N | 67 | 196 | 2.2e-29 | 102.5 | 2.3e-19 | 1.7e-15 | 57.4 |
| pfu_aug2.0_105.1_16928.t1 | 2 | 2 | RGM_N | 259 | 301 | 2.2e-29 | 102.5 | 1.1e-15 | 8.5e-12 | 45.3 |
| pfu_aug2.0_105.1_16928.t1 | 1 | 1 | RGM_C | 310 | 474 | 0.0 | 182.6 | 0.0 | 0.0 | 182.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_105.1_16928.t1 | gi|676423461|ref|XP_009044108.1| | hypothetical protein LOTGIDRAFT_83132, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_105.1_16928.t1 | gi|524897813|ref|XP_005105363.1| | PREDICTED: repulsive guidance molecule A-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_105.1_16928.t1 | gi|524897811|ref|XP_005105362.1| | PREDICTED: repulsive guidance molecule A-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_105.1_16928.t1 | gi|524897815|ref|XP_005105364.1| | PREDICTED: repulsive guidance molecule A-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_105.1_16928.t1 | gi|585704130|ref|XP_006823393.1| | PREDICTED: repulsive guidance molecule A-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_105.1_16928.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_105.1_16928.t1 atgactttccccgcaatatccaggtgtagattaatcctcagagaagtttaccaccagcgcgttccctactctccccctca cctcctctactccgggctatggaaggttatggcagtcttgtcctatccgcctatgccccctatttattggatgaccatcg tgtgtatactgaccatgtgcccaaaaccagcgctatgttgtgatatggtgatatgttacgataggtatatcgatgccaag gccgcggtaacgtacggacggatcaataaaacgttaggggaggatccagagtgtatccctctccgcacccagctagagtg tataattagtctggatgtgaagtgtaaacgtaatattcagtatgagggaataaaacaaggtattaaaatcaacatgaaca gaactggttgtcatgtgaacggtgtgacgttacgcccagatgatagccgtgccccggatcccggggataaaatataccaa gacctgctgatgtgcagtctgaaaggaaagcgatcggagagaaaatacaaacactgtagtttgtttggagacccccatct taggacgtttgataatgaattccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgtaaagtggagggtacgtggtc actcatatataacaggaatttatcagtgcaagtgaccaatgacccagtggtcagcgatggatccgctacagcaacaagca agctgactgtgatgataaagaagaatgtggattgtgcggccaatgaattcaagacgtacatggcccagacggatcatctg ccgggaacattctctgacggtatgacacactacggtcctgatagaagtgtgtatcttcgcgtgctcgaacccggcaaaaa tatcgagatctacttccggtatattgataccacaatacgggttcggcagattggacggtatttcacattcgccatcaaaa tgccggaaagtattgtggatgagtccaggaaactggacgaagaacaactctgtattcagggctgtccaaaacgagaaagg attgactatcaaagattcttagccgagaaacgcaaagtagcgctagaaaaacatggcagtatcaaaatgacacgagagga agcaagtgatttgtgccgtaaagaaaaagtggtggatttttatttcgactcgtgtgtgtttgaccttatgacaacggggg acacgaattttacaatggcagcctaccaggcttggcaggatttaattattttgtcccccgaatttgttccacgtcatcaa aacaggacagatttcaaaaagtacgatgacgaaatccacagtggtagcagacggactacccaaagtgaatatttttggat tatagtattatcagtgcttatttgtgtatatttccgacatacggattcataa |
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Protein
| Protein ID | pfu_aug2.0_105.1_16928.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_105.1_16928.t1 MTFPAISRCRLILREVYHQRVPYSPPHLLYSGLWKVMAVLSYPPMPPIYWMTIVCILTMCPKPALCCDMVICYDRYIDAK AAVTYGRINKTLGEDPECIPLRTQLECIISLDVKCKRNIQYEGIKQGIKINMNRTGCHVNGVTLRPDDSRAPDPGDKIYQ DLLMCSLKGKRSERKYKHCSLFGDPHLRTFDNEFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXCKVEGTWSLIYNRNLSVQVTNDPVVSDGSATATSKLTVMIKKNVDCAANEFKTYMAQTDHL PGTFSDGMTHYGPDRSVYLRVLEPGKNIEIYFRYIDTTIRVRQIGRYFTFAIKMPESIVDESRKLDEEQLCIQGCPKRER IDYQRFLAEKRKVALEKHGSIKMTREEASDLCRKEKVVDFYFDSCVFDLMTTGDTNFTMAAYQAWQDLIILSPEFVPRHQ NRTDFKKYDDEIHSGSRRTTQSEYFWIIVLSVLICVYFRHTDS |
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