Gene
| Gene Model ID | pfu_aug2.0_105.1_16935 |
|---|---|
| Locus | scaffold105.1 : 471653 ... 478811 : - |
| To GenomeBrowser | scaffold105.1:471653..478811 |
| Genes list of scaffold | scaffold105.1 |
| Synonym | pfu_aug1.0_3522.1_66718 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent dna helicase | GO:0003676 GO:0004003 GO:0006259 GO:0006974 GO:0032991 GO:0043232 GO:0044763 GO:0046914 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_105.1_16935.t1 | 1 | 1 | DEAD | 27 | 197 | 7.6e-15 | 54.8 | 1.7e-18 | 1.2e-14 | 54.1 |
| pfu_aug2.0_105.1_16935.t1 | 1 | 1 | Helicase_C | 276 | 352 | 5.7e-16 | 58.1 | 1.7e-19 | 1.3e-15 | 57.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_105.1_16935.t1 | gi|218692098|ref|YP_002400310.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_105.1_16935.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_105.1_16935.t1 atgtctatagacagggttaacgaggcgtatggcatactaaaggagagacattcttttccgttccatcttaaagcagggca aattagagtgttatgttccattttgcagggaaaggacagtattggacttttcccaaccggattcgggaagagtttatgct ttattttgcctccccttatcctggatctctcaaacaggtcaaaatgtcatatttcgattatcattagccctcttaaatcc atcatgatggaccagcgggatgacgccaggaagcgtggcataggtgcagtctccatttcaaataaatctgaactgaaaaa agatgaactggaaggaattgtagatggaaagtattcattagtatttctttcaccagaagtattaatgaacaataatgcat tttggaaaaagacatttctggattcagaagtatataggaaaaatgtatgcctgattgctgttgatgaggctcatatcatt gaaacttggggtgcggaatttagaccagcattcgcaaagataggtgatatgaggagtttttttccgaaaaccccattcct cctactaagtgctacctgtggtcgagatatgctggagaccatttgtaaaaaagttcatattctgcaacctcatatagaga catcctcttcagatagaccgaatattttcctatatgtgaagtcagaaccaggaatgcatcccttgcaagaactggagtgg gtaattgatcacgttaaggggaatggacaggcagcaatgaaaacgttgttatacgttcggaatctaacaacattagggaa gctgtacatggaaatttccatcaggctaaggaatcccaatattataaagtgctatcattccagtctcactacaaaggacc aaattgacatactggaagaatttaaaaaagcggacagtaccatccgattaattatatgtaccgtggcctttgggctcggg gtaaatattcctgatgttaggtatgttgttcactggggggcgtgtacatcggcactggaatattggcaagaagttggaag ggctggtcgtgatggcaaagactcgtttgcatattgctatgctttcaaagcatctttgattaatgtatctgaagatatga aaaaaataattaatgctgtaactgcaggaaactgcattagagaagcagttctgaagtcattcatatctaatgaagagaga agcacgtcacagtcttccactagccaatattgtcggtgtcggtgttgctcagtttgcaaatcgaagtgtcgatgtgatct ttga |
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Protein
| Protein ID | pfu_aug2.0_105.1_16935.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_105.1_16935.t1 MSIDRVNEAYGILKERHSFPFHLKAGQIRVLCSILQGKDSIGLFPTGFGKSLCFILPPLILDLSNRSKCHISIIISPLKS IMMDQRDDARKRGIGAVSISNKSELKKDELEGIVDGKYSLVFLSPEVLMNNNAFWKKTFLDSEVYRKNVCLIAVDEAHII ETWGAEFRPAFAKIGDMRSFFPKTPFLLLSATCGRDMLETICKKVHILQPHIETSSSDRPNIFLYVKSEPGMHPLQELEW VIDHVKGNGQAAMKTLLYVRNLTTLGKLYMEISIRLRNPNIIKCYHSSLTTKDQIDILEEFKKADSTIRLIICTVAFGLG VNIPDVRYVVHWGACTSALEYWQEVGRAGRDGKDSFAYCYAFKASLINVSEDMKKIINAVTAGNCIREAVLKSFISNEER STSQSSTSQYCRCRCCSVCKSKCRCDL |
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