Gene
| Gene Model ID | pfu_aug2.0_1051.1_04790 |
|---|---|
| Locus | scaffold1051.1 : 51767 ... 69005 : - |
| To GenomeBrowser | scaffold1051.1:51767..69005 |
| Genes list of scaffold | scaffold1051.1 |
| Synonym | pfu_aug1.0_35374.1_26712 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1051.1_04790.t1 | 1 | 1 | Pep_M12B_propep | 52 | 148 | 2.7e-19 | 69.2 | 3.4e-22 | 7.1e-19 | 67.8 |
| pfu_aug2.0_1051.1_04790.t1 | 2 | 1 | ADAM_spacer1 | 203 | 228 | 3.8e-10 | 39.6 | 3.4 | 7300.0 | -3.2 |
| pfu_aug2.0_1051.1_04790.t1 | 2 | 1 | Reprolysin | 220 | 419 | 4.3e-24 | 85.2 | 2.0e-27 | 4.3e-24 | 85.2 |
| pfu_aug2.0_1051.1_04790.t1 | 3 | 1 | Reprolysin_3 | 242 | 369 | 5.7e-09 | 36.5 | 2.7e-12 | 5.7e-09 | 36.5 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 1 | TSP_1 | 394 | 399 | 1.0e-12 | 47.9 | 1.7 | 3600.0 | -1.9 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 2 | TSP_1 | 442 | 457 | 1.0e-12 | 47.9 | 2.9 | 6100.0 | -2.6 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 3 | TSP_1 | 521 | 568 | 1.0e-12 | 47.9 | 1.0e-13 | 2.2e-10 | 40.4 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 4 | TSP_1 | 621 | 640 | 1.0e-12 | 47.9 | 1.2 | 2600.0 | -1.4 |
| pfu_aug2.0_1051.1_04790.t1 | 2 | 2 | ADAM_spacer1 | 671 | 781 | 3.8e-10 | 39.6 | 4.7e-13 | 9.9e-10 | 38.2 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 5 | TSP_1 | 797 | 822 | 1.0e-12 | 47.9 | 0.019 | 40.0 | 4.4 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 6 | TSP_1 | 854 | 906 | 1.0e-12 | 47.9 | 2.0e-05 | 0.043 | 13.9 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 7 | TSP_1 | 913 | 965 | 1.0e-12 | 47.9 | 2.7e-08 | 5.7e-05 | 23.1 |
| pfu_aug2.0_1051.1_04790.t1 | 3 | 2 | Reprolysin_3 | 1018 | 1095 | 5.7e-09 | 36.5 | 0.15 | 320.0 | 1.8 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 8 | TSP_1 | 1100 | 1145 | 1.0e-12 | 47.9 | 7.0 | 15000.0 | -5.2 |
| pfu_aug2.0_1051.1_04790.t1 | 3 | 3 | Reprolysin_3 | 1121 | 1210 | 5.7e-09 | 36.5 | 0.15 | 310.0 | 1.8 |
| pfu_aug2.0_1051.1_04790.t1 | 2 | 2 | Reprolysin | 1147 | 1147 | 4.3e-24 | 85.2 | 7.0 | 15000.0 | -6.6 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 9 | TSP_1 | 1159 | 1172 | 1.0e-12 | 47.9 | 7.0 | 15000.0 | -5.7 |
| pfu_aug2.0_1051.1_04790.t1 | 10 | 10 | TSP_1 | 1218 | 1230 | 1.0e-12 | 47.9 | 6.2 | 13000.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1051.1_04790.t1 | gi|344293002|ref|XP_003418213.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Loxodonta africana] | 0.0 |
| pfu_aug2.0_1051.1_04790.t1 | gi|545500409|ref|XP_005620943.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Canis lupus familiaris] | 0.0 |
| pfu_aug2.0_1051.1_04790.t1 | gi|562847940|ref|XP_006152798.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Tupaia chinensis] | 0.0 |
| pfu_aug2.0_1051.1_04790.t1 | gi|674095671|ref|XP_008821168.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_1051.1_04790.t1 | gi|532003040|ref|XP_005345771.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Microtus ochrogaster] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1051.1_04790.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1051.1_04790.t1 atgtcaatattattcaaagttgcagtgtgcttcacaaagttccatgaaaaattggagacggcagatctgaagtattactt tggtactaacaaactttatgaagttccagattatgaatttgttgaagtgaaacctattgaaattgtggagtctgaatctc aacagtatcacgtgacagctcttggagaaaattatcacgtgatcttgtatccaactatccatcttattagtccagattgt gtaatcgtcaacaaatacgataatggcacagaaagtaaacatccttgtgactctatgggattatgccatcaccatggtta cataaaaggcaagaattattcctcagtagccgtcagcacgtgcgatggcttgcatggtgtactgtcaacaggagaccatg atttgtacatacagcccgtcaaagatcatcatgtacatcttgcagctcctcatctcgactcctctgactcctcaaaatcg cctcataccagtacgcccaacaccagcaggcctcagcaatctaacactactcatctcatataccgacgacaagcaaagaa acaattctgcgctcatacaggagaacatgatgcagacaaatggagattagacagctcagatgatgaacatctaagacaga gacggtcaaccaaacaacacctaaaaatgaaggttgtcgtggcaccggacacatataaataccatggtggtgacacagaa cgctttattactacagttatgaatatggcagccaaattatttcttgactcttcattgagacatcaaattaaacttagcat tgtggagatggccattctacagaacgaacagtcaggtctgcagattgtctcggactctggtcaactgcttcataacttct gtcaatggcaaaaacaacaggagtccaacaatggaaaagtctcagatggaactctgcttataacaaagacagatttggtc cataatggtgacaagacaaacgtcggtttggcaaacatggcgtccgtctgtaccgtcaataagtgttctgttaacgagga cacaggcctggatactgcactgaccattgctcatgagactggacacacgttgggtatgcagcatgacggcacggggaatg gttgtaaggacggagttaacatcatggcggctggaggctcgtatggaccgacagctgctaaatggtccagctgtagtgct aactatctcagtcagttcctaagttcatcccagtccagttgtatgggcactgcacccagtgggagtgccgtacatttata cagcatgcagcagcacccgggtgttctgtactcggctgaccaacaatgttctatgctgtatggcaaggagacacaggcct gtcattccactacgaatccctgtgggagttactgcctggagcctaggaaaggtaatgctgtgagattgtgtatggacttt ggtacatacagggctgatggtacggagtgtgctacaggaaagtggtgcttggctggtcgctgtgtaccatatggtggtaa tggtccaagacctgtaaacggtggctggagctcctacgacaaggaatggtcaccttgctcaaggtcatgtggtggagggg tcaaggtcaaaagtagaaaatgtaacagtccaagcccacgatttggaggaagggactgtgtcggagaagaatcattggcc aaaatatgtaatgtacagccatgtggtaagagtgggttccagtttaaagaacaacaatgctcagcaaccaatgacaacaa tcactacacgtcctatgatatcagaggtaaagatcagtgtaagctgaaatgtgtacgtacagagaatggtatgatatacg acagagggcagacatttacggacgggacggattgttctatagactcgcccttcacttctaaatgtgtacaaggaaaatgc aaatcatttgggtgtgacggccatttaggctcacaggtacgatttgataactgtggagaatgtgggggaacaggaagggg atgtaatcagcattctggaacctacaaccaagggagagcaaacgcatttgtaacatttcttacaattcctaaagggtcca catcaataacagtaaccaatgacaacagatattgttatatgagcgttgtggtttctggtagaagactgtttagccaccaa ggtgcttcaccgtcaggaacctataacgggaacggtatagaagtccaataccgtaaatcaggaccagagaagatacacat cataggccctactaccagggatctccaagttcaggtgtaccgtcagtatgatgacacatatttgggtgtcagaccagagg tgaagtacacatattacatacctactcgcgtacagttccaagcaccctatcactggcagacaaggacttcatcatgcagt aaaacatgtggtacaggcagactcatagtatccgctgtgtgtgtacagagatccaccaataaggaagtggcagacgctaa gtgtaacctcttccagaaaccacgtgaggatgtcagggactgtaacacacgtgcatgcccaccagagtggcatgcctttg actggggaggttgttctcgctcttgtggaggtggtaccaggactagacgagtggcctgcgtgacaatccagagagaacag tatactgctgtgagcgagaacagatgtaacgctgccaggaagccgagcggaagtcagcaatgtgccgctcagaactgtgc cggagtgtggaaggcctccgcttggtctgcgtgttcacaaacatgtgcgtatggcacaagaacaagaagtgtaaggtgct acgggaatcaaatttcaaatcagccaatcagtgatgggcagtgtaaccaagctcagaaaccaactacatcagaaaaatgt atgacgcggccttgtgatctgaaaacaggtggagcgtcctgccatgataagaaatctgattgcaaggattatggatatag ctcatgtacaggacagtacagcaagtggggccaggaaaactgtgctttatactgtggtttctgtgtcaagaacccagatg cttttcaatcgtccactgactgccgtgacacggtcaattgtcctgactatggtgcggacgtgtgcacagcatacgctggt tggtcatctacacactgtaggaagcactgtaacttgtgtggagtgggcggaaattctggatcaagttcttcttcatcatc ttctcagtcttcttcatcatcacaaacatcacactcatcagccaatgaatgtaaagataaggtcaactgtaaggagtatg gcgacaatgtttgttctgaatttgctcattggtcaaaagaacattgcccagttacatgcaatctctgtcaagcagacagt acatcatcaaatcatggaacaagttcgtccagtcaatcatcttcatcacagacaaccaatcagtgtgtagataaagtagc ctgtgatgagtacggggatgacgtctgtgtcaagttctctgattggtcgaaaaagaattgcgctaaaacctgcaaacttt gtggagcagacagtacatcattaaatcatggaacaagttcatctagtcagtcatcttcatcacagacaaccaatcagtgt gtagataaagtagcctgtgatgagtacggtgatgatgtctgtgtcaagttctctgattggtcgaaaaagaattgcgctaa aacttgcaaactttgtggaggttcgtcatctggaaatgcggcttccacaacagtggtgagcagtgacccatgtagggata aggtcaaatgtgaggaatatggtgccaatgtctgcaaggactatgctgattggtcacaaaagaattgtgcacgccattgc aaattctgtcaaccttgcatgtatatcaaaaatttttnaaataaaatagaggaaatactgtctggcaaaagtgatgagga aaatgaacttaaaaatttggatgctgaacagaaatttggggcaaaagaagaaaacatggcactcgaggaagaacatgctg atctagaggaaaatactgacgagtcattcacaataccaaatgatgaaactaacgtggctgatggactggaaggaaggcgt ggtccagtgataccagaaatagaatctggtcgcgtgcctattcctgttgaaaatgaaaatgatttggctaacacaatttt agagacaatggaaattgaaactccacccccaccaccccctaaaagactcccaggaatgttagttggtgaaccagtaaata tgaacaatgatggtctgcaaaatgtgctaccaaaacatgaaacaaagaacatagcggttggggatcaggataaattacac ctacaggaagagatcgacatgttgcaggatatagaaatcaaatga |
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Protein
| Protein ID | pfu_aug2.0_1051.1_04790.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1051.1_04790.t1 MSILFKVAVCFTKFHEKLETADLKYYFGTNKLYEVPDYEFVEVKPIEIVESESQQYHVTALGENYHVILYPTIHLISPDC VIVNKYDNGTESKHPCDSMGLCHHHGYIKGKNYSSVAVSTCDGLHGVLSTGDHDLYIQPVKDHHVHLAAPHLDSSDSSKS PHTSTPNTSRPQQSNTTHLIYRRQAKKQFCAHTGEHDADKWRLDSSDDEHLRQRRSTKQHLKMKVVVAPDTYKYHGGDTE RFITTVMNMAAKLFLDSSLRHQIKLSIVEMAILQNEQSGLQIVSDSGQLLHNFCQWQKQQESNNGKVSDGTLLITKTDLV HNGDKTNVGLANMASVCTVNKCSVNEDTGLDTALTIAHETGHTLGMQHDGTGNGCKDGVNIMAAGGSYGPTAAKWSSCSA NYLSQFLSSSQSSCMGTAPSGSAVHLYSMQQHPGVLYSADQQCSMLYGKETQACHSTTNPCGSYCLEPRKGNAVRLCMDF GTYRADGTECATGKWCLAGRCVPYGGNGPRPVNGGWSSYDKEWSPCSRSCGGGVKVKSRKCNSPSPRFGGRDCVGEESLA KICNVQPCGKSGFQFKEQQCSATNDNNHYTSYDIRGKDQCKLKCVRTENGMIYDRGQTFTDGTDCSIDSPFTSKCVQGKC KSFGCDGHLGSQVRFDNCGECGGTGRGCNQHSGTYNQGRANAFVTFLTIPKGSTSITVTNDNRYCYMSVVVSGRRLFSHQ GASPSGTYNGNGIEVQYRKSGPEKIHIIGPTTRDLQVQVYRQYDDTYLGVRPEVKYTYYIPTRVQFQAPYHWQTRTSSCS KTCGTGRLIVSAVCVQRSTNKEVADAKCNLFQKPREDVRDCNTRACPPEWHAFDWGGCSRSCGGGTRTRRVACVTIQREQ YTAVSENRCNAARKPSGSQQCAAQNCAGVWKASAWSACSQTCAYGTRTRSVRCYGNQISNQPISDGQCNQAQKPTTSEKC MTRPCDLKTGGASCHDKKSDCKDYGYSSCTGQYSKWGQENCALYCGFCVKNPDAFQSSTDCRDTVNCPDYGADVCTAYAG WSSTHCRKHCNLCGVGGNSGSSSSSSSSQSSSSSQTSHSSANECKDKVNCKEYGDNVCSEFAHWSKEHCPVTCNLCQADS TSSNHGTSSSSQSSSSQTTNQCVDKVACDEYGDDVCVKFSDWSKKNCAKTCKLCGADSTSLNHGTSSSSQSSSSQTTNQC VDKVACDEYGDDVCVKFSDWSKKNCAKTCKLCGGSSSGNAASTTVVSSDPCRDKVKCEEYGANVCKDYADWSQKNCARHC KFCQPCMYIKNFXNKIEEILSGKSDEENELKNLDAEQKFGAKEENMALEEEHADLEENTDESFTIPNDETNVADGLEGRR GPVIPEIESGRVPIPVENENDLANTILETMEIETPPPPPPKRLPGMLVGEPVNMNNDGLQNVLPKHETKNIAVGDQDKLH LQEEIDMLQDIEIK |
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