Gene
| Gene Model ID | pfu_aug2.0_1051.1_04791 |
|---|---|
| Locus | scaffold1051.1 : 75284 ... 87685 : - |
| To GenomeBrowser | scaffold1051.1:75284..87685 |
| Genes list of scaffold | scaffold1051.1 |
| Synonym | pfu_aug1.0_4246.1_01681 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| wd repeat-containing protein 48 | GO:0005634 GO:0005737 GO:0006974 GO:0008584 GO:0016579 GO:0019953 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1051.1_04791.t1 | 9 | 1 | WD40 | 14 | 43 | 2.0e-40 | 135.2 | 4.4e-09 | 2.2e-05 | 24.1 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 2 | WD40 | 52 | 87 | 2.0e-40 | 135.2 | 1.1e-10 | 5.6e-07 | 29.2 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 3 | WD40 | 93 | 104 | 2.0e-40 | 135.2 | 0.35 | 1700.0 | -0.9 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 4 | WD40 | 136 | 169 | 2.0e-40 | 135.2 | 4.5e-06 | 0.022 | 14.6 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 5 | WD40 | 185 | 220 | 2.0e-40 | 135.2 | 3.3e-08 | 0.00016 | 21.3 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 6 | WD40 | 226 | 262 | 2.0e-40 | 135.2 | 2.1e-12 | 1.0e-08 | 34.7 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 7 | WD40 | 267 | 300 | 2.0e-40 | 135.2 | 1.0e-05 | 0.05 | 13.5 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 8 | WD40 | 368 | 390 | 2.0e-40 | 135.2 | 0.2 | 990.0 | -0.2 |
| pfu_aug2.0_1051.1_04791.t1 | 9 | 9 | WD40 | 406 | 438 | 2.0e-40 | 135.2 | 0.59 | 2900.0 | -1.7 |
| pfu_aug2.0_1051.1_04791.t1 | 1 | 1 | DUF3337 | 418 | 693 | 0.0 | 163.9 | 0.0 | 0.0 | 163.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1051.1_04791.t1 | gi|694849340|ref|XP_009465852.1| | PREDICTED: WD repeat-containing protein 48 [Nipponia nippon] | 0.0 |
| pfu_aug2.0_1051.1_04791.t1 | gi|543743426|ref|XP_005512552.1| | PREDICTED: WD repeat-containing protein 48 [Columba livia] | 0.0 |
| pfu_aug2.0_1051.1_04791.t1 | gi|719755155|ref|XP_010214392.1| | PREDICTED: WD repeat-containing protein 48, partial [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_1051.1_04791.t1 | gi|729720380|ref|XP_010559341.1| | PREDICTED: WD repeat-containing protein 48 isoform X2 [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_1051.1_04791.t1 | gi|706107728|ref|XP_010207495.1| | PREDICTED: WD repeat-containing protein 48, partial [Colius striatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1051.1_04791.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1051.1_04791.t1 atggtgtcatttgtgattagagatgaagtggagagataccacagatcaggggtcaacgctttacagtttgaccccgccct acgacgtctgtattctgcaggcagagactcaatcatacgcatatggaacacacaaacaaacaaggacccatacatacaat ccatggagcatcacactgactgggtcaatgatatagtgctatgctgtggagggaggacattaatttcggcttccagtgat acgacagtcaaagtatggaatgctcacaaaggattctgtatgtctacgttacgtacacataaagatagtgttttattaga ggatagtgttttattagaggatagtgttatattagtggatagtattagatcaggggatagtgttatattagaggatagtg ttataacattggatactgttagggactatgtgaaatccctagcctatgccagagacaaggaacaggtggcttcagctggt ctcgatcgggcgatattcctgtgggacgtcaatacactaacagccctcaccgcctctaacaatactgtaactacatcaag tttgaacgggaataagaactctatatatagcctggccatgaactctccagggacggtcatagtctcagggtctacagaaa aagtgttacgcgtctgggaccccaggacatgccagaaactgatgaagctgaaaggtcatacagacaatgttaaagctcta gtattaaacagagatggaacacagtgtctgtcaggtagttcagatggtacaatacgtttatggtctctgggccagcaaag atgtgtggctacattccgtgtacatgacgagggggtatgggcattacaagctaacgacagtttctccacagtttattctg gtggaagagatcgtaggatatgggccacagatatacggaaccctgagtacagagctctaatctgtgaggaacaggcacca gtattaaagcttgaattgacacatacagatcagccatgtttatgggtaaccactacagattcctgtatcaaatcatggac tgacaaacacaaacagacatacaaacagacagacacatacaaatcagccatgtttgtgggtaatcactacactgtttcct gtatcaaatcatggccgttacagaaagtaagtgctttatcgtccagagattatgacaacgacaatttaaaacccctctac tcacaaccagaatacactataaaaggtggatcaagcatacgacagtactacgtcctcaatgacaaacgtcacatactgac caaagacaccgatgacaatgttgcattatgggatgtgctaacggctagaaaagtagaagatctaaagaaagtggactttg aagaacagataaggaaattgttcaagatggtgtatgtacctaactggttcactgtggatcttaaaacagggttgctgacg atccatttagatgagtctgattgtttctcagcgtggatgtcggccagggaactagggatgatatcatcacaggagggcac agacaccaaattgaacatgggccagcagttattacaagctttattggaacactggccaaaacatcatacatatgagtctc aagacggtatgaatggtatgatggagaatggtgatggtgcaccattttttacagtaccaggacacactccggtcatattc tgtgagataggaggacgggcattatttcggctattatgtagggacgcagcaggtgaaacagaaaagatgttactaaacga gactgtgccgtcatgggtcatagaggttgtagttcatagggcatcgccaaaatcaacgaaaattccatttttcctccaac ctcatccgtgtacagggattaaacttgtcaaaaaagataggttatcagccagtgatatgatacaagtgagaaaagtcata gaacatgtgtacgagaaagtcttaggtcagggatctgaaaacggctcccagaatgcatctggaggaagtcaggaacgaga ggaaagtgaaaaagaggctacagacttatcatcaatagctgaagagaaagtagaattattgtgtaacgatcaggccattt attatggcagatatatgatagcagctgagatatctgatatttggagatctgtttga |
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Protein
| Protein ID | pfu_aug2.0_1051.1_04791.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1051.1_04791.t1 MVSFVIRDEVERYHRSGVNALQFDPALRRLYSAGRDSIIRIWNTQTNKDPYIQSMEHHTDWVNDIVLCCGGRTLISASSD TTVKVWNAHKGFCMSTLRTHKDSVLLEDSVLLEDSVILVDSIRSGDSVILEDSVITLDTVRDYVKSLAYARDKEQVASAG LDRAIFLWDVNTLTALTASNNTVTTSSLNGNKNSIYSLAMNSPGTVIVSGSTEKVLRVWDPRTCQKLMKLKGHTDNVKAL VLNRDGTQCLSGSSDGTIRLWSLGQQRCVATFRVHDEGVWALQANDSFSTVYSGGRDRRIWATDIRNPEYRALICEEQAP VLKLELTHTDQPCLWVTTTDSCIKSWTDKHKQTYKQTDTYKSAMFVGNHYTVSCIKSWPLQKVSALSSRDYDNDNLKPLY SQPEYTIKGGSSIRQYYVLNDKRHILTKDTDDNVALWDVLTARKVEDLKKVDFEEQIRKLFKMVYVPNWFTVDLKTGLLT IHLDESDCFSAWMSARELGMISSQEGTDTKLNMGQQLLQALLEHWPKHHTYESQDGMNGMMENGDGAPFFTVPGHTPVIF CEIGGRALFRLLCRDAAGETEKMLLNETVPSWVIEVVVHRASPKSTKIPFFLQPHPCTGIKLVKKDRLSASDMIQVRKVI EHVYEKVLGQGSENGSQNASGGSQEREESEKEATDLSSIAEEKVELLCNDQAIYYGRYMIAAEISDIWRSV |
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